Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Col18a1P39061 Gm10767-202ENSMUST00000168767 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col18a1P39061 Rinl-206ENSMUST00000209035 2898 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col18a1P39061 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Col18a1P39061 Tmem176b-202ENSMUST00000164733 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col18a1P39061 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Col18a1P39061 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col18a1P39061 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col18a1P39061 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col18a1P39061 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Col18a1P39061 Brsk1-204ENSMUST00000205666 1398 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Col18a1P39061 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col18a1P39061 Eef1akmt2-202ENSMUST00000120425 573 ntTSL 3 BASIC16.94■□□□□ 0.3
Col18a1P39061 Gm15619-201ENSMUST00000128415 1294 ntTSL 3 BASIC16.94■□□□□ 0.3
Col18a1P39061 Gm22877-201ENSMUST00000175451 105 ntBASIC16.94■□□□□ 0.3
Col18a1P39061 Gm42629-201ENSMUST00000199063 1102 ntBASIC16.94■□□□□ 0.3
Col18a1P39061 Gm19640-201ENSMUST00000214849 464 ntBASIC16.94■□□□□ 0.3
Col18a1P39061 Gm11149-203ENSMUST00000215465 805 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Col18a1P39061 AC166344.1-201ENSMUST00000223745 674 ntBASIC16.94■□□□□ 0.3
Col18a1P39061 CT025553.1-201ENSMUST00000226292 299 ntBASIC16.94■□□□□ 0.3
Col18a1P39061 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC16.94■□□□□ 0.3
Col18a1P39061 Alg14-201ENSMUST00000039442 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col18a1P39061 Sgce-209ENSMUST00000133306 1619 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Col18a1P39061 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col18a1P39061 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col18a1P39061 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col18a1P39061 F10-205ENSMUST00000152034 1449 ntTSL 5 BASIC16.94■□□□□ 0.3
Col18a1P39061 Uba6-202ENSMUST00000113373 3504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col18a1P39061 8430408G22Rik-202ENSMUST00000178241 1317 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col18a1P39061 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col18a1P39061 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC16.93■□□□□ 0.3
Col18a1P39061 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
Col18a1P39061 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col18a1P39061 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col18a1P39061 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col18a1P39061 Ecsit-203ENSMUST00000179422 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col18a1P39061 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC16.93■□□□□ 0.3
Col18a1P39061 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Col18a1P39061 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Col18a1P39061 Phxr2-201ENSMUST00000060761 1159 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
Col18a1P39061 Dmrtc1c2-201ENSMUST00000087896 1255 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col18a1P39061 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col18a1P39061 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col18a1P39061 Kcnj11-205ENSMUST00000211674 3142 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
Col18a1P39061 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Col18a1P39061 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col18a1P39061 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col18a1P39061 Nxf2-202ENSMUST00000113187 2316 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col18a1P39061 Oxct1-205ENSMUST00000138927 1743 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Col18a1P39061 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col18a1P39061 CT025610.1-201ENSMUST00000224552 1786 ntBASIC16.92■□□□□ 0.3
Col18a1P39061 Lrrfip2-213ENSMUST00000216430 1525 ntTSL 5 BASIC16.92■□□□□ 0.3
Col18a1P39061 Use1-202ENSMUST00000110053 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col18a1P39061 Gm8731-201ENSMUST00000118088 412 ntBASIC16.92■□□□□ 0.3
Col18a1P39061 Gm14219-201ENSMUST00000120414 288 ntBASIC16.92■□□□□ 0.3
Col18a1P39061 Gm4862-201ENSMUST00000170405 438 ntBASIC16.92■□□□□ 0.3
Col18a1P39061 4930562C15Rik-202ENSMUST00000171105 1299 ntTSL 2 BASIC16.92■□□□□ 0.3
Col18a1P39061 Wdr53-204ENSMUST00000178573 1153 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Col18a1P39061 Gm6408-201ENSMUST00000179032 1171 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Col18a1P39061 A430105J06Rik-201ENSMUST00000180869 1275 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Col18a1P39061 Gm18304-201ENSMUST00000189162 546 ntBASIC16.92■□□□□ 0.3
Col18a1P39061 Gm35549-201ENSMUST00000203176 735 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Col18a1P39061 Gm2875-201ENSMUST00000211333 360 ntBASIC16.92■□□□□ 0.3
Col18a1P39061 Mt1-202ENSMUST00000211807 1085 ntBASIC16.92■□□□□ 0.3
Col18a1P39061 Gm45781-201ENSMUST00000212860 539 ntTSL 5 BASIC16.92■□□□□ 0.3
Col18a1P39061 Snrpg-201ENSMUST00000089558 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col18a1P39061 Xkr5-202ENSMUST00000095438 2838 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col18a1P39061 Gm8798-201ENSMUST00000211877 1661 ntBASIC16.92■□□□□ 0.3
Col18a1P39061 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC16.92■□□□□ 0.3
Col18a1P39061 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Col18a1P39061 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Col18a1P39061 Oard1-202ENSMUST00000167180 1324 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col18a1P39061 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col18a1P39061 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col18a1P39061 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col18a1P39061 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col18a1P39061 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC16.92■□□□□ 0.3
Col18a1P39061 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col18a1P39061 Ppp2r5c-201ENSMUST00000084985 1847 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
Col18a1P39061 Gm20662-201ENSMUST00000176356 601 ntAPPRIS P5 TSL 3 BASIC16.92■□□□□ 0.3
Col18a1P39061 Mir6923-201ENSMUST00000184592 72 ntBASIC16.92■□□□□ 0.3
Col18a1P39061 Gm31166-202ENSMUST00000210638 1268 ntTSL 3 BASIC16.92■□□□□ 0.3
Col18a1P39061 Gm3285-201ENSMUST00000218443 908 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
Col18a1P39061 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col18a1P39061 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
Col18a1P39061 Kcnma1-213ENSMUST00000188991 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col18a1P39061 Car14-201ENSMUST00000036181 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col18a1P39061 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Col18a1P39061 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col18a1P39061 BC030500-201ENSMUST00000062978 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col18a1P39061 Themis3-201ENSMUST00000024914 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col18a1P39061 Dlg4-203ENSMUST00000108588 3457 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col18a1P39061 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Col18a1P39061 Entpd5-204ENSMUST00000117286 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col18a1P39061 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col18a1P39061 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col18a1P39061 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Col18a1P39061 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Col18a1P39061 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col18a1P39061 Gm25076-201ENSMUST00000104098 132 ntBASIC16.91■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms