Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hoxd3P09027 Gm22331-201ENSMUST00000158066 136 ntBASIC10.32□□□□□ -0.76
Hoxd3P09027 Gm16133-202ENSMUST00000160278 565 ntTSL 3 BASIC10.32□□□□□ -0.76
Hoxd3P09027 Gm8810-201ENSMUST00000172895 754 ntBASIC10.32□□□□□ -0.76
Hoxd3P09027 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC10.32□□□□□ -0.76
Hoxd3P09027 Proscos-202ENSMUST00000178990 666 ntBASIC10.32□□□□□ -0.76
Hoxd3P09027 Vmn1r206-201ENSMUST00000187140 1135 ntAPPRIS P1 BASIC10.32□□□□□ -0.76
Hoxd3P09027 Gm28439-201ENSMUST00000187714 876 ntBASIC10.32□□□□□ -0.76
Hoxd3P09027 1600019K03Rik-201ENSMUST00000187829 477 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
Hoxd3P09027 Gm45784-201ENSMUST00000188360 142 ntBASIC10.32□□□□□ -0.76
Hoxd3P09027 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC10.32□□□□□ -0.76
Hoxd3P09027 Ube2f-210ENSMUST00000191368 1110 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hoxd3P09027 Gm5149-201ENSMUST00000199768 620 ntTSL 3 BASIC10.32□□□□□ -0.76
Hoxd3P09027 4930598N05Rik-205ENSMUST00000208693 873 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
Hoxd3P09027 4930584E12Rik-201ENSMUST00000216646 981 ntBASIC10.32□□□□□ -0.76
Hoxd3P09027 CT025525.1-201ENSMUST00000226325 1054 ntBASIC10.32□□□□□ -0.76
Hoxd3P09027 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hoxd3P09027 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hoxd3P09027 Gm16372-201ENSMUST00000073088 450 ntBASIC10.32□□□□□ -0.76
Hoxd3P09027 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hoxd3P09027 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hoxd3P09027 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC10.32□□□□□ -0.76
Hoxd3P09027 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
Hoxd3P09027 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hoxd3P09027 Zfp467-203ENSMUST00000114558 3115 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
Hoxd3P09027 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC10.32□□□□□ -0.76
Hoxd3P09027 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hoxd3P09027 Dis3l-203ENSMUST00000120760 3661 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
Hoxd3P09027 Mau2-202ENSMUST00000168013 5323 ntAPPRIS ALT2 TSL 5 BASIC10.32□□□□□ -0.76
Hoxd3P09027 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hoxd3P09027 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hoxd3P09027 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hoxd3P09027 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC10.32□□□□□ -0.76
Hoxd3P09027 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC10.32□□□□□ -0.76
Hoxd3P09027 Gm42872-201ENSMUST00000200026 1967 ntBASIC10.32□□□□□ -0.76
Hoxd3P09027 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hoxd3P09027 Mtmr2-208ENSMUST00000155679 3088 ntTSL 5 BASIC10.32□□□□□ -0.76
Hoxd3P09027 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC10.32□□□□□ -0.76
Hoxd3P09027 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hoxd3P09027 Adamts7-208ENSMUST00000167122 5338 ntAPPRIS ALT2 TSL 5 BASIC10.31□□□□□ -0.76
Hoxd3P09027 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hoxd3P09027 Scarb2-201ENSMUST00000031377 4698 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hoxd3P09027 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
Hoxd3P09027 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hoxd3P09027 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC10.31□□□□□ -0.76
Hoxd3P09027 Cgnl1-202ENSMUST00000121322 6541 ntAPPRIS ALT2 TSL 5 BASIC10.31□□□□□ -0.76
Hoxd3P09027 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
Hoxd3P09027 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hoxd3P09027 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hoxd3P09027 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hoxd3P09027 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hoxd3P09027 Gm44286-201ENSMUST00000204098 1487 ntBASIC10.31□□□□□ -0.76
Hoxd3P09027 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC10.31□□□□□ -0.76
Hoxd3P09027 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC10.31□□□□□ -0.76
Hoxd3P09027 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC10.31□□□□□ -0.76
Hoxd3P09027 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC10.31□□□□□ -0.76
Hoxd3P09027 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hoxd3P09027 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hoxd3P09027 Nudt18-201ENSMUST00000089049 3926 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hoxd3P09027 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hoxd3P09027 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hoxd3P09027 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC10.31□□□□□ -0.76
Hoxd3P09027 Tpd52l2-203ENSMUST00000108799 985 ntTSL 5 BASIC10.31□□□□□ -0.76
Hoxd3P09027 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hoxd3P09027 Gm11400-201ENSMUST00000120853 1214 ntBASIC10.31□□□□□ -0.76
Hoxd3P09027 Gm10156-201ENSMUST00000122364 462 ntBASIC10.31□□□□□ -0.76
Hoxd3P09027 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hoxd3P09027 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC10.31□□□□□ -0.76
Hoxd3P09027 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC10.31□□□□□ -0.76
Hoxd3P09027 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC10.31□□□□□ -0.76
Hoxd3P09027 Tcrg-C4-201ENSMUST00000179181 985 ntAPPRIS P1 BASIC10.31□□□□□ -0.76
Hoxd3P09027 Gm29127-201ENSMUST00000188304 517 ntBASIC10.31□□□□□ -0.76
Hoxd3P09027 Gm37753-201ENSMUST00000192178 439 ntTSL 2 BASIC10.31□□□□□ -0.76
Hoxd3P09027 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
Hoxd3P09027 Gm44146-201ENSMUST00000203508 816 ntBASIC10.31□□□□□ -0.76
Hoxd3P09027 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC10.31□□□□□ -0.76
Hoxd3P09027 Gabarapl1-204ENSMUST00000204956 539 ntAPPRIS P1 TSL 3 BASIC10.31□□□□□ -0.76
Hoxd3P09027 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC10.31□□□□□ -0.76
Hoxd3P09027 AC166349.1-201ENSMUST00000220866 695 ntBASIC10.31□□□□□ -0.76
Hoxd3P09027 Gm19189-201ENSMUST00000221689 754 ntBASIC10.31□□□□□ -0.76
Hoxd3P09027 AC173210.1-201ENSMUST00000222341 1131 ntBASIC10.31□□□□□ -0.76
Hoxd3P09027 Atp6v0c-201ENSMUST00000024932 1183 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hoxd3P09027 Acyp1-201ENSMUST00000008966 648 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hoxd3P09027 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC10.31□□□□□ -0.76
Hoxd3P09027 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
Hoxd3P09027 Hsd3b4-202ENSMUST00000196861 1610 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hoxd3P09027 Cnbp-209ENSMUST00000204890 1614 ntAPPRIS ALT1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hoxd3P09027 Gm10681-201ENSMUST00000058728 1610 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hoxd3P09027 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hoxd3P09027 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hoxd3P09027 Fgfr1-201ENSMUST00000084027 5025 ntAPPRIS P3 TSL 5 BASIC10.31□□□□□ -0.76
Hoxd3P09027 Gm43364-201ENSMUST00000196046 3274 ntBASIC10.31□□□□□ -0.76
Hoxd3P09027 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hoxd3P09027 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hoxd3P09027 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC10.31□□□□□ -0.76
Hoxd3P09027 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC10.31□□□□□ -0.76
Hoxd3P09027 Gtf2ird1-229ENSMUST00000202554 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hoxd3P09027 Hspa4-201ENSMUST00000020630 4618 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hoxd3P09027 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC10.31□□□□□ -0.76
Hoxd3P09027 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Retrieved 100 of 76,532 protein–RNA pairs in 57.1 ms