Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 Pex12-207ENSMUST00000176518 2501 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 Vax2os-203ENSMUST00000155159 4063 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 Arhgef2-201ENSMUST00000029694 4300 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Prpf40aQ9R1C7 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Prpf40aQ9R1C7 Aqr-201ENSMUST00000043160 4888 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Prpf40aQ9R1C7 Zbtb20-205ENSMUST00000114695 2977 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Prpf40aQ9R1C7 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Prpf40aQ9R1C7 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Prpf40aQ9R1C7 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Prpf40aQ9R1C7 Mfn2-203ENSMUST00000105715 4043 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Prpf40aQ9R1C7 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
Prpf40aQ9R1C7 Adcyap1r1-208ENSMUST00000172084 1344 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
Prpf40aQ9R1C7 Cep68-201ENSMUST00000050611 4804 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Prpf40aQ9R1C7 Gm7002-201ENSMUST00000221386 2165 ntBASIC14.49□□□□□ -0.09
Prpf40aQ9R1C7 Gm15336-201ENSMUST00000128894 1571 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Prpf40aQ9R1C7 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Prpf40aQ9R1C7 Gm15755-201ENSMUST00000133698 659 ntTSL 3 BASIC14.49□□□□□ -0.09
Prpf40aQ9R1C7 Gm9794-201ENSMUST00000202370 423 ntBASIC14.49□□□□□ -0.09
Prpf40aQ9R1C7 2310016G11Rik-202ENSMUST00000209111 733 ntTSL 3 BASIC14.49□□□□□ -0.09
Prpf40aQ9R1C7 Gm9908-201ENSMUST00000211534 448 ntBASIC14.49□□□□□ -0.09
Prpf40aQ9R1C7 Gm45706-201ENSMUST00000213063 2136 ntBASIC14.49□□□□□ -0.09
Prpf40aQ9R1C7 Ndufa4l2-201ENSMUST00000035735 934 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Prpf40aQ9R1C7 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
Prpf40aQ9R1C7 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC14.49□□□□□ -0.09
Prpf40aQ9R1C7 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Prpf40aQ9R1C7 Ssr1-203ENSMUST00000225246 1825 ntBASIC14.49□□□□□ -0.09
Prpf40aQ9R1C7 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Prpf40aQ9R1C7 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Prpf40aQ9R1C7 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC14.49□□□□□ -0.09
Prpf40aQ9R1C7 Clec4g-201ENSMUST00000058040 1441 ntTSL 5 BASIC14.49□□□□□ -0.09
Prpf40aQ9R1C7 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Prpf40aQ9R1C7 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Prpf40aQ9R1C7 Epha5-204ENSMUST00000113401 5158 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Prpf40aQ9R1C7 Grip1-212ENSMUST00000147356 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Prpf40aQ9R1C7 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Prpf40aQ9R1C7 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Prpf40aQ9R1C7 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Prpf40aQ9R1C7 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Prpf40aQ9R1C7 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Prpf40aQ9R1C7 Grip1-202ENSMUST00000077871 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Prpf40aQ9R1C7 Lzts3-202ENSMUST00000089561 4169 ntAPPRIS P3 TSL 5 BASIC14.48□□□□□ -0.09
Prpf40aQ9R1C7 Mettl1-201ENSMUST00000006915 1791 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Prpf40aQ9R1C7 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC14.48□□□□□ -0.09
Prpf40aQ9R1C7 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC14.48□□□□□ -0.09
Prpf40aQ9R1C7 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Prpf40aQ9R1C7 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
Prpf40aQ9R1C7 Gm11918-201ENSMUST00000121660 179 ntBASIC14.48□□□□□ -0.09
Prpf40aQ9R1C7 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Prpf40aQ9R1C7 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
Prpf40aQ9R1C7 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Prpf40aQ9R1C7 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC14.48□□□□□ -0.09
Prpf40aQ9R1C7 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC14.48□□□□□ -0.09
Prpf40aQ9R1C7 Nupr1-201ENSMUST00000032961 829 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Prpf40aQ9R1C7 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Prpf40aQ9R1C7 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Prpf40aQ9R1C7 Wiz-201ENSMUST00000064694 2871 ntAPPRIS P4 TSL 1 (best) BASIC14.48□□□□□ -0.09
Prpf40aQ9R1C7 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Prpf40aQ9R1C7 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
Prpf40aQ9R1C7 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Prpf40aQ9R1C7 Gm26819-201ENSMUST00000180656 5128 ntTSL 5 BASIC14.48□□□□□ -0.09
Prpf40aQ9R1C7 Gm10176-201ENSMUST00000159707 2264 ntBASIC14.48□□□□□ -0.09
Prpf40aQ9R1C7 Sv2b-202ENSMUST00000165175 5524 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Prpf40aQ9R1C7 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC14.48□□□□□ -0.09
Prpf40aQ9R1C7 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
Prpf40aQ9R1C7 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
Prpf40aQ9R1C7 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Prpf40aQ9R1C7 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
Prpf40aQ9R1C7 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Prpf40aQ9R1C7 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Prpf40aQ9R1C7 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC14.47□□□□□ -0.09
Prpf40aQ9R1C7 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC14.47□□□□□ -0.09
Prpf40aQ9R1C7 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC14.47□□□□□ -0.09
Prpf40aQ9R1C7 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Prpf40aQ9R1C7 Nwd2-201ENSMUST00000159584 8534 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Prpf40aQ9R1C7 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Prpf40aQ9R1C7 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC14.47□□□□□ -0.09
Prpf40aQ9R1C7 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC14.47□□□□□ -0.09
Prpf40aQ9R1C7 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Prpf40aQ9R1C7 Ngf-201ENSMUST00000035952 904 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
Prpf40aQ9R1C7 Dpm3-201ENSMUST00000040824 404 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Prpf40aQ9R1C7 Swi5-201ENSMUST00000050410 775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Prpf40aQ9R1C7 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Prpf40aQ9R1C7 Slc4a1ap-209ENSMUST00000202214 2806 ntAPPRIS P3 TSL 5 BASIC14.47□□□□□ -0.09
Prpf40aQ9R1C7 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
Prpf40aQ9R1C7 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
Prpf40aQ9R1C7 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Prpf40aQ9R1C7 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Prpf40aQ9R1C7 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Prpf40aQ9R1C7 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Prpf40aQ9R1C7 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Prpf40aQ9R1C7 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC14.46□□□□□ -0.09
Prpf40aQ9R1C7 Map3k12-201ENSMUST00000023812 5182 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Prpf40aQ9R1C7 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
Prpf40aQ9R1C7 Ero1lb-201ENSMUST00000071973 4239 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Prpf40aQ9R1C7 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC14.46□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 73.5 ms