Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ushbp1Q8R370 B230217C12Rik-202ENSMUST00000155954 2181 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Ano6-208ENSMUST00000227791 3149 ntAPPRIS ALT2 BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Adam11-202ENSMUST00000103081 4620 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Ces2e-202ENSMUST00000109410 1999 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Rhbdd3-203ENSMUST00000109878 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Olfr71-202ENSMUST00000107862 2587 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Gm13689-201ENSMUST00000119360 685 ntBASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Gm11400-201ENSMUST00000120853 1214 ntBASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Gm13562-201ENSMUST00000125198 797 ntTSL 2 BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Gm26542-201ENSMUST00000180443 1235 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Gm8565-201ENSMUST00000183259 1014 ntBASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Gm38223-201ENSMUST00000194484 695 ntBASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Dmac1-201ENSMUST00000030103 741 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Zfp595-205ENSMUST00000171466 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Slc4a1ap-209ENSMUST00000202214 2806 ntAPPRIS P3 TSL 5 BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Sirt2-201ENSMUST00000072965 1843 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Ssh1-204ENSMUST00000159592 8436 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 AC137842.1-201ENSMUST00000227896 2064 ntBASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Yif1a-201ENSMUST00000025811 1493 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 0610010F05Rik-208ENSMUST00000180260 4128 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Apol6-201ENSMUST00000127957 2034 ntAPPRIS P4 TSL 2 BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC14.75□□□□□ -0.05
Ushbp1Q8R370 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Ushbp1Q8R370 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC14.74□□□□□ -0.05
Ushbp1Q8R370 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Ushbp1Q8R370 Gga3-202ENSMUST00000106508 3582 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Ushbp1Q8R370 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Ushbp1Q8R370 Nrf1-210ENSMUST00000115211 3295 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Ushbp1Q8R370 Lrp2bp-202ENSMUST00000110380 1603 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Ushbp1Q8R370 Pcdh7-202ENSMUST00000094783 3752 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Ushbp1Q8R370 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Ushbp1Q8R370 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC14.74□□□□□ -0.05
Ushbp1Q8R370 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
Ushbp1Q8R370 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC14.74□□□□□ -0.05
Ushbp1Q8R370 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Ushbp1Q8R370 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Ushbp1Q8R370 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Ushbp1Q8R370 Htr2c-203ENSMUST00000112831 809 ntTSL 3 BASIC14.74□□□□□ -0.05
Ushbp1Q8R370 Gm6161-201ENSMUST00000121942 1102 ntBASIC14.74□□□□□ -0.05
Ushbp1Q8R370 Zdhhc4-208ENSMUST00000161915 1216 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
Ushbp1Q8R370 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
Ushbp1Q8R370 Gm6254-201ENSMUST00000168178 1072 ntBASIC14.74□□□□□ -0.05
Ushbp1Q8R370 Gm6153-201ENSMUST00000172004 1058 ntBASIC14.74□□□□□ -0.05
Ushbp1Q8R370 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
Ushbp1Q8R370 2610306M01Rik-201ENSMUST00000185414 1042 ntBASIC14.74□□□□□ -0.05
Ushbp1Q8R370 Gm5641-202ENSMUST00000198699 1080 ntBASIC14.74□□□□□ -0.05
Ushbp1Q8R370 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC14.74□□□□□ -0.05
Ushbp1Q8R370 Gm9257-201ENSMUST00000221254 232 ntBASIC14.74□□□□□ -0.05
Ushbp1Q8R370 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Ushbp1Q8R370 Net1-207ENSMUST00000223258 597 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Ushbp1Q8R370 CT573086.1-201ENSMUST00000227202 1074 ntBASIC14.74□□□□□ -0.05
Ushbp1Q8R370 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
Ushbp1Q8R370 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Ushbp1Q8R370 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Ushbp1Q8R370 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Ushbp1Q8R370 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
Ushbp1Q8R370 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Ushbp1Q8R370 AC096628.2-201ENSMUST00000225443 1413 ntBASIC14.74□□□□□ -0.05
Ushbp1Q8R370 Prss36-201ENSMUST00000094026 3061 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
Ushbp1Q8R370 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Ushbp1Q8R370 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
Ushbp1Q8R370 Srsf1-205ENSMUST00000139129 5362 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Ushbp1Q8R370 Plcd3-201ENSMUST00000103077 3023 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Ushbp1Q8R370 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Ushbp1Q8R370 Gm18222-201ENSMUST00000202416 1387 ntBASIC14.73□□□□□ -0.05
Ushbp1Q8R370 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Ushbp1Q8R370 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Ushbp1Q8R370 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC14.73□□□□□ -0.05
Ushbp1Q8R370 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Ushbp1Q8R370 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Ushbp1Q8R370 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Ushbp1Q8R370 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Ushbp1Q8R370 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Ushbp1Q8R370 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC14.73□□□□□ -0.05
Ushbp1Q8R370 Vps35-201ENSMUST00000034131 3474 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 69.6 ms