Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 AC137842.1-201ENSMUST00000227896 2064 ntBASIC15.5■□□□□ 0.07
Trim56Q80VI1 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC15.5■□□□□ 0.07
Trim56Q80VI1 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Trim56Q80VI1 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Trim56Q80VI1 Maged2-201ENSMUST00000026302 2207 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
Trim56Q80VI1 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trim56Q80VI1 Eme1-201ENSMUST00000039949 2444 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trim56Q80VI1 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trim56Q80VI1 Dlgap1-202ENSMUST00000097288 2626 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Trim56Q80VI1 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trim56Q80VI1 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Trim56Q80VI1 Dctn2-201ENSMUST00000026479 1784 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trim56Q80VI1 Prss36-202ENSMUST00000118755 3028 ntAPPRIS P2 TSL 5 BASIC15.49■□□□□ 0.07
Trim56Q80VI1 Gm9754-201ENSMUST00000031305 3004 ntTSL 2 BASIC15.49■□□□□ 0.07
Trim56Q80VI1 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC15.49■□□□□ 0.07
Trim56Q80VI1 Sp6-202ENSMUST00000107622 3621 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trim56Q80VI1 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Trim56Q80VI1 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Trim56Q80VI1 Gm5620-201ENSMUST00000077991 1348 ntBASIC15.49■□□□□ 0.07
Trim56Q80VI1 Cdadc1-201ENSMUST00000022555 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trim56Q80VI1 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trim56Q80VI1 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trim56Q80VI1 Pnn-201ENSMUST00000021381 3485 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trim56Q80VI1 Myl6-202ENSMUST00000217733 1668 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Trim56Q80VI1 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trim56Q80VI1 Gm14285-201ENSMUST00000146049 380 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Trim56Q80VI1 Mtmr2-209ENSMUST00000156801 617 ntTSL 5 BASIC15.49■□□□□ 0.07
Trim56Q80VI1 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Trim56Q80VI1 Gm38411-201ENSMUST00000197971 941 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Trim56Q80VI1 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC15.49■□□□□ 0.07
Trim56Q80VI1 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Trim56Q80VI1 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC15.49■□□□□ 0.07
Trim56Q80VI1 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Trim56Q80VI1 Usmg5-201ENSMUST00000096014 341 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trim56Q80VI1 Nol10-201ENSMUST00000046011 3021 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trim56Q80VI1 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trim56Q80VI1 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trim56Q80VI1 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trim56Q80VI1 Vars-201ENSMUST00000087315 4137 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trim56Q80VI1 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trim56Q80VI1 Gm43570-201ENSMUST00000199951 3688 ntBASIC15.49■□□□□ 0.07
Trim56Q80VI1 Jph2-201ENSMUST00000017961 4211 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trim56Q80VI1 Plcd3-201ENSMUST00000103077 3023 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trim56Q80VI1 Ptgdr2-201ENSMUST00000037261 2644 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trim56Q80VI1 Dlk1-204ENSMUST00000109843 1300 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Trim56Q80VI1 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trim56Q80VI1 Igf1-203ENSMUST00000105300 1673 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Trim56Q80VI1 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
Trim56Q80VI1 Gak-201ENSMUST00000046603 4453 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trim56Q80VI1 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trim56Q80VI1 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trim56Q80VI1 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Trim56Q80VI1 Arl5c-202ENSMUST00000107563 823 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Trim56Q80VI1 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC15.48■□□□□ 0.07
Trim56Q80VI1 Gm12957-201ENSMUST00000117835 377 ntBASIC15.48■□□□□ 0.07
Trim56Q80VI1 Gm11637-201ENSMUST00000120601 592 ntBASIC15.48■□□□□ 0.07
Trim56Q80VI1 Gm15046-201ENSMUST00000130153 408 ntTSL 3 BASIC15.48■□□□□ 0.07
Trim56Q80VI1 Snora78-201ENSMUST00000158630 128 ntBASIC15.48■□□□□ 0.07
Trim56Q80VI1 Gm15853-201ENSMUST00000160268 556 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Trim56Q80VI1 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Trim56Q80VI1 Borcs5-202ENSMUST00000166591 792 ntTSL 2 BASIC15.48■□□□□ 0.07
Trim56Q80VI1 Gm27514-201ENSMUST00000183692 110 ntBASIC15.48■□□□□ 0.07
Trim56Q80VI1 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trim56Q80VI1 Gm37424-201ENSMUST00000191727 561 ntBASIC15.48■□□□□ 0.07
Trim56Q80VI1 5830487J09Rik-201ENSMUST00000198600 1256 ntTSL 5 BASIC15.48■□□□□ 0.07
Trim56Q80VI1 Gm5149-201ENSMUST00000199768 620 ntTSL 3 BASIC15.48■□□□□ 0.07
Trim56Q80VI1 Gm36198-201ENSMUST00000217490 416 ntTSL 3 BASIC15.48■□□□□ 0.07
Trim56Q80VI1 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trim56Q80VI1 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trim56Q80VI1 Dlg5-203ENSMUST00000090398 7851 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trim56Q80VI1 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trim56Q80VI1 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trim56Q80VI1 Suv39h1-201ENSMUST00000115636 2707 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Trim56Q80VI1 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Trim56Q80VI1 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trim56Q80VI1 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Trim56Q80VI1 Gcdh-201ENSMUST00000003907 2167 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trim56Q80VI1 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trim56Q80VI1 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trim56Q80VI1 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC15.48■□□□□ 0.07
Trim56Q80VI1 Suclg1-201ENSMUST00000064740 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trim56Q80VI1 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trim56Q80VI1 Mfn2-203ENSMUST00000105715 4043 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trim56Q80VI1 Tcf4-249ENSMUST00000202435 2427 ntTSL 5 BASIC15.47■□□□□ 0.07
Trim56Q80VI1 Abtb2-201ENSMUST00000076212 4558 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trim56Q80VI1 Fam219a-202ENSMUST00000108050 3321 ntTSL 5 BASIC15.47■□□□□ 0.07
Trim56Q80VI1 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trim56Q80VI1 Mknk1-201ENSMUST00000019677 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trim56Q80VI1 Snord83b-201ENSMUST00000104546 94 ntBASIC15.47■□□□□ 0.07
Trim56Q80VI1 Gm16282-201ENSMUST00000162641 451 ntTSL 3 BASIC15.47■□□□□ 0.07
Trim56Q80VI1 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
Trim56Q80VI1 Klhl30-201ENSMUST00000027533 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trim56Q80VI1 Mal-201ENSMUST00000028853 486 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Trim56Q80VI1 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trim56Q80VI1 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trim56Q80VI1 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Trim56Q80VI1 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Trim56Q80VI1 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trim56Q80VI1 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trim56Q80VI1 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 42.5 ms