Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Gm15395-201ENSMUST00000153724 702 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Trim28Q62318 Lage3-201ENSMUST00000015433 761 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim28Q62318 Gm17376-201ENSMUST00000166016 84 ntBASIC16.95■□□□□ 0.3
Trim28Q62318 Gm42838-201ENSMUST00000196503 439 ntTSL 5 BASIC16.95■□□□□ 0.3
Trim28Q62318 Ppcdc-207ENSMUST00000214339 738 ntTSL 2 BASIC16.95■□□□□ 0.3
Trim28Q62318 Rps3a1-201ENSMUST00000029722 977 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim28Q62318 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
Trim28Q62318 Itln1-201ENSMUST00000043094 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim28Q62318 Ssc4d-201ENSMUST00000054895 1191 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Trim28Q62318 Mrps21-201ENSMUST00000067298 488 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim28Q62318 Fmr1nb-202ENSMUST00000071848 842 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim28Q62318 Sertad1-201ENSMUST00000008528 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim28Q62318 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim28Q62318 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim28Q62318 Vmn1r217-201ENSMUST00000091721 897 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
Trim28Q62318 Ccdc190-201ENSMUST00000094348 1731 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim28Q62318 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Trim28Q62318 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim28Q62318 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim28Q62318 Mettl14-201ENSMUST00000029759 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim28Q62318 Rasal3-207ENSMUST00000137458 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim28Q62318 Ldlrad3-201ENSMUST00000058790 3833 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim28Q62318 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim28Q62318 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC16.95■□□□□ 0.3
Trim28Q62318 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC16.94■□□□□ 0.3
Trim28Q62318 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim28Q62318 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim28Q62318 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim28Q62318 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Trim28Q62318 Cdc42se1-201ENSMUST00000053872 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim28Q62318 Gm19221-201ENSMUST00000221827 1477 ntBASIC16.94■□□□□ 0.3
Trim28Q62318 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim28Q62318 Zfp36l1-201ENSMUST00000021552 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim28Q62318 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim28Q62318 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim28Q62318 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
Trim28Q62318 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Trim28Q62318 Mrpl2-202ENSMUST00000113429 998 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Trim28Q62318 Gm14381-201ENSMUST00000122105 414 ntBASIC16.94■□□□□ 0.3
Trim28Q62318 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC16.94■□□□□ 0.3
Trim28Q62318 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Trim28Q62318 Mocs2-215ENSMUST00000184335 646 ntTSL 5 BASIC16.94■□□□□ 0.3
Trim28Q62318 AC167013.1-201ENSMUST00000228592 202 ntBASIC16.94■□□□□ 0.3
Trim28Q62318 Mirlet7c-2-201ENSMUST00000083674 95 ntBASIC16.94■□□□□ 0.3
Trim28Q62318 Dmrtc1c2-201ENSMUST00000087896 1255 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim28Q62318 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim28Q62318 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Trim28Q62318 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Trim28Q62318 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim28Q62318 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Trim28Q62318 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Trim28Q62318 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim28Q62318 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
Trim28Q62318 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim28Q62318 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim28Q62318 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim28Q62318 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim28Q62318 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Trim28Q62318 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim28Q62318 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC16.93■□□□□ 0.3
Trim28Q62318 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim28Q62318 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Trim28Q62318 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim28Q62318 Gm12058-201ENSMUST00000118614 437 ntBASIC16.93■□□□□ 0.3
Trim28Q62318 Gm26083-201ENSMUST00000157904 193 ntBASIC16.93■□□□□ 0.3
Trim28Q62318 Ighv1-62-201ENSMUST00000193406 350 ntBASIC16.93■□□□□ 0.3
Trim28Q62318 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC16.93■□□□□ 0.3
Trim28Q62318 Eaf2-201ENSMUST00000023537 849 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
Trim28Q62318 Prss39-201ENSMUST00000027299 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim28Q62318 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim28Q62318 Txn2-201ENSMUST00000005487 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim28Q62318 Gm12166-201ENSMUST00000093169 958 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
Trim28Q62318 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim28Q62318 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim28Q62318 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim28Q62318 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim28Q62318 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Trim28Q62318 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Trim28Q62318 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim28Q62318 Gm10176-201ENSMUST00000159707 2264 ntBASIC16.93■□□□□ 0.3
Trim28Q62318 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim28Q62318 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim28Q62318 CT025610.1-201ENSMUST00000224552 1786 ntBASIC16.92■□□□□ 0.3
Trim28Q62318 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim28Q62318 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim28Q62318 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Trim28Q62318 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim28Q62318 Gm15236-201ENSMUST00000117309 379 ntBASIC16.92■□□□□ 0.3
Trim28Q62318 Gm12749-201ENSMUST00000122138 1159 ntBASIC16.92■□□□□ 0.3
Trim28Q62318 Tex22-201ENSMUST00000012355 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim28Q62318 Gm14019-201ENSMUST00000131514 403 ntTSL 3 BASIC16.92■□□□□ 0.3
Trim28Q62318 1700003G18Rik-201ENSMUST00000140689 633 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Trim28Q62318 Gm8018-201ENSMUST00000173536 789 ntBASIC16.92■□□□□ 0.3
Trim28Q62318 Gm20482-202ENSMUST00000174729 825 ntBASIC16.92■□□□□ 0.3
Trim28Q62318 Gm5597-201ENSMUST00000182353 1193 ntBASIC16.92■□□□□ 0.3
Trim28Q62318 6530403H02Rik-204ENSMUST00000183276 659 ntTSL 3 BASIC16.92■□□□□ 0.3
Trim28Q62318 Gm30459-201ENSMUST00000206203 1193 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Trim28Q62318 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC16.92■□□□□ 0.3
Trim28Q62318 Treml1-201ENSMUST00000024792 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim28Q62318 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 70 ms