Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm43273-201ENSMUST00000199649 2594 ntBASIC12.8□□□□□ -0.36
Col28a1Q2UY11 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col28a1Q2UY11 Zc3h4-201ENSMUST00000098789 6039 ntAPPRIS P2 TSL 5 BASIC12.8□□□□□ -0.36
Col28a1Q2UY11 Ptx4-201ENSMUST00000054930 1582 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col28a1Q2UY11 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col28a1Q2UY11 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Col28a1Q2UY11 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col28a1Q2UY11 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col28a1Q2UY11 Pde4d-220ENSMUST00000177907 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col28a1Q2UY11 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Col28a1Q2UY11 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Gm42957-201ENSMUST00000137564 3624 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Gm11557-201ENSMUST00000120200 1008 ntBASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Cd63-ps-201ENSMUST00000145417 875 ntBASIC12.79□□□□□ -0.36
Col28a1Q2UY11 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Gm8927-201ENSMUST00000181978 981 ntBASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Gm28631-201ENSMUST00000190740 334 ntBASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Gm6745-201ENSMUST00000199216 526 ntBASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Col28a1Q2UY11 AC087891.2-201ENSMUST00000219293 658 ntTSL 5 BASIC12.79□□□□□ -0.36
Col28a1Q2UY11 AC121804.3-201ENSMUST00000223420 295 ntBASIC12.79□□□□□ -0.36
Col28a1Q2UY11 1700020A23Rik-201ENSMUST00000028898 712 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Gm3222-201ENSMUST00000071282 990 ntBASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Fthl17c-201ENSMUST00000075792 850 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Zc3h4-202ENSMUST00000209289 5853 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Gm15163-201ENSMUST00000120749 1302 ntBASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Zfyve28-201ENSMUST00000094868 3983 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Rap1gds1-202ENSMUST00000098574 3669 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Enpp5-203ENSMUST00000154166 2490 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Myh14-203ENSMUST00000107900 6400 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Col28a1Q2UY11 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Col28a1Q2UY11 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col28a1Q2UY11 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col28a1Q2UY11 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Col28a1Q2UY11 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Col28a1Q2UY11 Gm37269-201ENSMUST00000193906 1891 ntBASIC12.78□□□□□ -0.36
Col28a1Q2UY11 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col28a1Q2UY11 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col28a1Q2UY11 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Col28a1Q2UY11 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col28a1Q2UY11 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col28a1Q2UY11 Ilvbl-212ENSMUST00000220430 2350 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Col28a1Q2UY11 Hnrnph2-202ENSMUST00000059297 2364 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col28a1Q2UY11 Plxnb2-202ENSMUST00000109331 6377 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Col28a1Q2UY11 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col28a1Q2UY11 Bcat2-203ENSMUST00000209204 2081 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Col28a1Q2UY11 Asap1-218ENSMUST00000177374 4582 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col28a1Q2UY11 Ggt6-203ENSMUST00000108499 874 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Col28a1Q2UY11 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC12.78□□□□□ -0.36
Col28a1Q2UY11 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
Col28a1Q2UY11 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC12.78□□□□□ -0.36
Col28a1Q2UY11 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Col28a1Q2UY11 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC12.78□□□□□ -0.36
Col28a1Q2UY11 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Col28a1Q2UY11 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC12.78□□□□□ -0.36
Col28a1Q2UY11 Dupd1-202ENSMUST00000224735 548 ntBASIC12.78□□□□□ -0.36
Col28a1Q2UY11 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col28a1Q2UY11 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col28a1Q2UY11 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Col28a1Q2UY11 Gm7049-201ENSMUST00000223520 1712 ntBASIC12.78□□□□□ -0.36
Col28a1Q2UY11 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col28a1Q2UY11 Abcd1-201ENSMUST00000002084 3648 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col28a1Q2UY11 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col28a1Q2UY11 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col28a1Q2UY11 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col28a1Q2UY11 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col28a1Q2UY11 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC12.78□□□□□ -0.36
Col28a1Q2UY11 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col28a1Q2UY11 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col28a1Q2UY11 C530008M17Rik-204ENSMUST00000121160 6921 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Col28a1Q2UY11 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col28a1Q2UY11 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col28a1Q2UY11 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Col28a1Q2UY11 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Col28a1Q2UY11 Vmn1r198-202ENSMUST00000226786 6195 ntAPPRIS P2 BASIC12.77□□□□□ -0.36
Col28a1Q2UY11 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 54 ms