Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Gm4654-201ENSMUST00000183305 982 ntBASIC19.72■□□□□ 0.75
Col17a1Q07563 Gm28901-201ENSMUST00000188810 474 ntTSL 5 BASIC19.72■□□□□ 0.75
Col17a1Q07563 Gm45085-201ENSMUST00000209100 441 ntBASIC19.72■□□□□ 0.75
Col17a1Q07563 Gm18514-201ENSMUST00000218980 436 ntBASIC19.72■□□□□ 0.75
Col17a1Q07563 Gm9661-201ENSMUST00000221611 1122 ntBASIC19.72■□□□□ 0.75
Col17a1Q07563 AC165154.1-201ENSMUST00000226661 340 ntBASIC19.72■□□□□ 0.75
Col17a1Q07563 Sapcd1-201ENSMUST00000040151 935 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col17a1Q07563 Uba52-201ENSMUST00000081940 541 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
Col17a1Q07563 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col17a1Q07563 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col17a1Q07563 Zmym3-205ENSMUST00000119699 1750 ntTSL 5 BASIC19.71■□□□□ 0.75
Col17a1Q07563 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Col17a1Q07563 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Col17a1Q07563 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col17a1Q07563 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col17a1Q07563 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC19.71■□□□□ 0.75
Col17a1Q07563 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Col17a1Q07563 Hist2h4-201ENSMUST00000171473 1630 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
Col17a1Q07563 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Col17a1Q07563 Krtap4-6-201ENSMUST00000100476 918 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
Col17a1Q07563 Cdk5rap1-202ENSMUST00000109730 1227 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Col17a1Q07563 Ice2-202ENSMUST00000117246 1201 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Col17a1Q07563 Gm12676-201ENSMUST00000149078 808 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Col17a1Q07563 Prox2os-201ENSMUST00000177043 1133 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Col17a1Q07563 Gm8343-201ENSMUST00000182705 994 ntBASIC19.71■□□□□ 0.75
Col17a1Q07563 Gm6390-201ENSMUST00000215034 589 ntBASIC19.71■□□□□ 0.75
Col17a1Q07563 1700011B04Rik-203ENSMUST00000220654 1033 ntTSL 5 BASIC19.71■□□□□ 0.75
Col17a1Q07563 1700011B04Rik-209ENSMUST00000221760 779 ntTSL 5 BASIC19.71■□□□□ 0.75
Col17a1Q07563 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col17a1Q07563 BC030499-201ENSMUST00000046361 959 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Col17a1Q07563 Mir326-201ENSMUST00000083637 95 ntBASIC19.71■□□□□ 0.75
Col17a1Q07563 Gm9072-201ENSMUST00000218390 1514 ntBASIC19.71■□□□□ 0.75
Col17a1Q07563 Mettl1-201ENSMUST00000006915 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col17a1Q07563 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col17a1Q07563 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC19.71■□□□□ 0.75
Col17a1Q07563 Cyp2c53-ps-203ENSMUST00000176493 1443 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Col17a1Q07563 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col17a1Q07563 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col17a1Q07563 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col17a1Q07563 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col17a1Q07563 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col17a1Q07563 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Col17a1Q07563 Gm43598-201ENSMUST00000202482 2479 ntBASIC19.7■□□□□ 0.74
Col17a1Q07563 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC19.7■□□□□ 0.74
Col17a1Q07563 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Col17a1Q07563 Lats2-210ENSMUST00000174694 3287 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
Col17a1Q07563 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col17a1Q07563 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col17a1Q07563 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col17a1Q07563 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC19.7■□□□□ 0.74
Col17a1Q07563 Gm14234-201ENSMUST00000119539 845 ntBASIC19.7■□□□□ 0.74
Col17a1Q07563 Gm12298-201ENSMUST00000126999 731 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Col17a1Q07563 Zfp961-203ENSMUST00000132848 781 ntTSL 5 BASIC19.7■□□□□ 0.74
Col17a1Q07563 Gm16305-201ENSMUST00000140747 556 ntBASIC19.7■□□□□ 0.74
Col17a1Q07563 Gm22846-201ENSMUST00000157706 270 ntBASIC19.7■□□□□ 0.74
Col17a1Q07563 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC19.7■□□□□ 0.74
Col17a1Q07563 Ighv6-7-201ENSMUST00000193397 357 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Col17a1Q07563 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col17a1Q07563 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col17a1Q07563 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col17a1Q07563 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Col17a1Q07563 Etfdh-201ENSMUST00000029386 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col17a1Q07563 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col17a1Q07563 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col17a1Q07563 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC19.69■□□□□ 0.74
Col17a1Q07563 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col17a1Q07563 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col17a1Q07563 Tle6-210ENSMUST00000142948 1961 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col17a1Q07563 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col17a1Q07563 Rbfox1-202ENSMUST00000115841 1191 ntTSL 5 BASIC19.69■□□□□ 0.74
Col17a1Q07563 Fopnl-202ENSMUST00000120707 1414 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
Col17a1Q07563 Mrto4-ps2-201ENSMUST00000164169 549 ntBASIC19.69■□□□□ 0.74
Col17a1Q07563 Gm20420-201ENSMUST00000173178 639 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Col17a1Q07563 Apoe-210ENSMUST00000174710 514 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Col17a1Q07563 A630035G10Rik-202ENSMUST00000194468 1065 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Col17a1Q07563 Gm39397-201ENSMUST00000212331 228 ntTSL 5 BASIC19.69■□□□□ 0.74
Col17a1Q07563 AC134328.1-201ENSMUST00000222693 667 ntTSL 2 BASIC19.69■□□□□ 0.74
Col17a1Q07563 Prss52-201ENSMUST00000022537 1064 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col17a1Q07563 Gstm2-202ENSMUST00000066530 854 ntTSL 3 BASIC19.69■□□□□ 0.74
Col17a1Q07563 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col17a1Q07563 Tex101-201ENSMUST00000078001 1059 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col17a1Q07563 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col17a1Q07563 Stau2-214ENSMUST00000162007 2964 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Col17a1Q07563 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col17a1Q07563 Mxd3-201ENSMUST00000021941 1327 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col17a1Q07563 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Col17a1Q07563 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col17a1Q07563 Cap2-202ENSMUST00000119341 2454 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Col17a1Q07563 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col17a1Q07563 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col17a1Q07563 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col17a1Q07563 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col17a1Q07563 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Col17a1Q07563 Gm5847-201ENSMUST00000178959 1595 ntBASIC19.68■□□□□ 0.74
Col17a1Q07563 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC19.68■□□□□ 0.74
Col17a1Q07563 Enpp7-202ENSMUST00000106273 1408 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Col17a1Q07563 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col17a1Q07563 Gm28719-201ENSMUST00000187779 1757 ntBASIC19.68■□□□□ 0.74
Col17a1Q07563 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col17a1Q07563 Rtn2-202ENSMUST00000108468 1076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 61 ms