Protein–RNA interactions for Protein: Q03358

Msx2, Homeobox protein MSX-2, mousemouse

Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx2Q03358 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msx2Q03358 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msx2Q03358 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msx2Q03358 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Msx2Q03358 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Msx2Q03358 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msx2Q03358 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msx2Q03358 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msx2Q03358 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Msx2Q03358 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msx2Q03358 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msx2Q03358 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msx2Q03358 Mir7221-201ENSMUST00000184009 72 ntBASIC12.74□□□□□ -0.37
Msx2Q03358 Gm27525-201ENSMUST00000184465 107 ntBASIC12.74□□□□□ -0.37
Msx2Q03358 Gm10766-202ENSMUST00000194123 606 ntBASIC12.74□□□□□ -0.37
Msx2Q03358 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Msx2Q03358 Gm9229-201ENSMUST00000222777 126 ntBASIC12.74□□□□□ -0.37
Msx2Q03358 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Msx2Q03358 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msx2Q03358 Foxj3-202ENSMUST00000106310 4660 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msx2Q03358 Pif1-202ENSMUST00000131483 3309 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msx2Q03358 Dgcr2-203ENSMUST00000117082 2987 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Msx2Q03358 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC12.74□□□□□ -0.37
Msx2Q03358 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msx2Q03358 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Msx2Q03358 Trak1-213ENSMUST00000211439 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msx2Q03358 Gm44292-201ENSMUST00000205194 2364 ntBASIC12.73□□□□□ -0.37
Msx2Q03358 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Msx2Q03358 Col6a2-201ENSMUST00000001181 3949 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx2Q03358 Gm37391-201ENSMUST00000194891 2318 ntBASIC12.73□□□□□ -0.37
Msx2Q03358 Fgfr1op-201ENSMUST00000024636 3077 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx2Q03358 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Msx2Q03358 Gm5320-201ENSMUST00000207163 1519 ntBASIC12.73□□□□□ -0.37
Msx2Q03358 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC12.73□□□□□ -0.37
Msx2Q03358 Gemin4-201ENSMUST00000102500 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx2Q03358 Mynn-202ENSMUST00000192715 5555 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx2Q03358 Trio-201ENSMUST00000090247 11495 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Msx2Q03358 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx2Q03358 Olfr61-202ENSMUST00000210241 1348 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Msx2Q03358 Wdr18-201ENSMUST00000045247 3911 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx2Q03358 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx2Q03358 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Msx2Q03358 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Msx2Q03358 Gm6415-201ENSMUST00000118488 348 ntBASIC12.73□□□□□ -0.37
Msx2Q03358 Gm15393-201ENSMUST00000120499 219 ntBASIC12.73□□□□□ -0.37
Msx2Q03358 Gm24420-201ENSMUST00000176676 59 ntBASIC12.73□□□□□ -0.37
Msx2Q03358 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Msx2Q03358 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Msx2Q03358 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Msx2Q03358 Tcea1-201ENSMUST00000081551 2547 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx2Q03358 Ibtk-201ENSMUST00000039213 5650 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx2Q03358 Pik3cd-203ENSMUST00000105689 3132 ntAPPRIS ALT1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx2Q03358 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx2Q03358 Zbtb49-201ENSMUST00000094833 2978 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx2Q03358 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Msx2Q03358 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Msx2Q03358 Ercc4-201ENSMUST00000023206 3480 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx2Q03358 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx2Q03358 Gm7049-201ENSMUST00000223520 1712 ntBASIC12.73□□□□□ -0.37
Msx2Q03358 Pbxip1-201ENSMUST00000038942 4479 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx2Q03358 Olfr95-202ENSMUST00000216318 4917 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Msx2Q03358 B230217C12Rik-202ENSMUST00000155954 2181 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Msx2Q03358 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Msx2Q03358 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx2Q03358 Terb2-201ENSMUST00000028661 2115 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msx2Q03358 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Msx2Q03358 Gm44758-201ENSMUST00000206096 2068 ntBASIC12.73□□□□□ -0.37
Msx2Q03358 Rrnad1-201ENSMUST00000005016 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Msx2Q03358 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Msx2Q03358 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Msx2Q03358 Cyb5rl-201ENSMUST00000030364 2360 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Msx2Q03358 Rxfp3-201ENSMUST00000058007 4275 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Msx2Q03358 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Msx2Q03358 Vsx2-202ENSMUST00000169934 3249 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Msx2Q03358 Pik3r6-201ENSMUST00000060441 3237 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Msx2Q03358 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Msx2Q03358 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC12.72□□□□□ -0.37
Msx2Q03358 Vit-201ENSMUST00000024880 2720 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Msx2Q03358 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Msx2Q03358 Kcp-203ENSMUST00000101614 4885 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Msx2Q03358 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Msx2Q03358 Espn-201ENSMUST00000030785 3406 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Msx2Q03358 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Msx2Q03358 Gm22065-201ENSMUST00000103753 110 ntBASIC12.72□□□□□ -0.37
Msx2Q03358 Gm22066-201ENSMUST00000103761 110 ntBASIC12.72□□□□□ -0.37
Msx2Q03358 Gm24932-201ENSMUST00000103763 110 ntBASIC12.72□□□□□ -0.37
Msx2Q03358 Gm24115-201ENSMUST00000103799 110 ntBASIC12.72□□□□□ -0.37
Msx2Q03358 Gm22190-201ENSMUST00000103827 110 ntBASIC12.72□□□□□ -0.37
Msx2Q03358 Gm22191-201ENSMUST00000103831 110 ntBASIC12.72□□□□□ -0.37
Msx2Q03358 Gm24721-201ENSMUST00000103849 110 ntBASIC12.72□□□□□ -0.37
Msx2Q03358 Gm28018-201ENSMUST00000103869 110 ntBASIC12.72□□□□□ -0.37
Msx2Q03358 Gm26399-201ENSMUST00000103937 110 ntBASIC12.72□□□□□ -0.37
Msx2Q03358 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC12.72□□□□□ -0.37
Msx2Q03358 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC12.72□□□□□ -0.37
Msx2Q03358 Gm24158-201ENSMUST00000175263 71 ntBASIC12.72□□□□□ -0.37
Msx2Q03358 Gm25349-201ENSMUST00000177728 110 ntBASIC12.72□□□□□ -0.37
Msx2Q03358 Gm23616-201ENSMUST00000177797 110 ntBASIC12.72□□□□□ -0.37
Msx2Q03358 Gm25871-201ENSMUST00000177816 110 ntBASIC12.72□□□□□ -0.37
Msx2Q03358 Gm24752-201ENSMUST00000178240 110 ntBASIC12.72□□□□□ -0.37
Msx2Q03358 Gm24496-201ENSMUST00000178287 110 ntBASIC12.72□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 47.5 ms