Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
Nkx3-1P97436 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Nkx3-1P97436 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC11.36□□□□□ -0.59
Nkx3-1P97436 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Nkx3-1P97436 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
Nkx3-1P97436 Celf4-207ENSMUST00000225477 2626 ntAPPRIS P3 BASIC11.36□□□□□ -0.59
Nkx3-1P97436 Tmem218-201ENSMUST00000034632 2619 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Nkx3-1P97436 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Nkx3-1P97436 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Nkx3-1P97436 Taz-204ENSMUST00000124200 1742 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Nkx3-1P97436 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Nkx3-1P97436 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Nkx3-1P97436 Tmod4-202ENSMUST00000107227 1260 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
Nkx3-1P97436 Inca1-203ENSMUST00000108542 1080 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.59
Nkx3-1P97436 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Nkx3-1P97436 Gm9431-201ENSMUST00000119765 1051 ntBASIC11.36□□□□□ -0.59
Nkx3-1P97436 Gm13297-201ENSMUST00000120205 934 ntBASIC11.36□□□□□ -0.59
Nkx3-1P97436 Gm45692-201ENSMUST00000131138 557 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
Nkx3-1P97436 Gm33474-201ENSMUST00000199486 1231 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Nkx3-1P97436 Gm4768-201ENSMUST00000206199 686 ntBASIC11.36□□□□□ -0.59
Nkx3-1P97436 AC132384.14-201ENSMUST00000219346 1147 ntBASIC11.36□□□□□ -0.59
Nkx3-1P97436 AC159747.1-201ENSMUST00000219903 265 ntBASIC11.36□□□□□ -0.59
Nkx3-1P97436 Dph3-201ENSMUST00000022461 1057 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Nkx3-1P97436 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Nkx3-1P97436 n-R5s77-201ENSMUST00000083757 119 ntBASIC11.36□□□□□ -0.59
Nkx3-1P97436 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Nkx3-1P97436 Ick-203ENSMUST00000117330 2698 ntAPPRIS ALT2 TSL 2 BASIC11.36□□□□□ -0.59
Nkx3-1P97436 Rfx7-205ENSMUST00000184015 1554 ntTSL 5 BASIC11.36□□□□□ -0.59
Nkx3-1P97436 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Nkx3-1P97436 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
Nkx3-1P97436 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.59
Nkx3-1P97436 Myo10-202ENSMUST00000110457 8125 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Nkx3-1P97436 Mpi-201ENSMUST00000034856 1780 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Nkx3-1P97436 Dysf-213ENSMUST00000203803 6590 ntTSL 5 BASIC11.36□□□□□ -0.59
Nkx3-1P97436 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC11.36□□□□□ -0.59
Nkx3-1P97436 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Nkx3-1P97436 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Nkx3-1P97436 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Nkx3-1P97436 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Nkx3-1P97436 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Nkx3-1P97436 Mir877-201ENSMUST00000104738 85 ntBASIC11.35□□□□□ -0.59
Nkx3-1P97436 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC11.35□□□□□ -0.59
Nkx3-1P97436 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC11.35□□□□□ -0.59
Nkx3-1P97436 Gm12363-201ENSMUST00000122250 668 ntBASIC11.35□□□□□ -0.59
Nkx3-1P97436 Gm15501-201ENSMUST00000133910 849 ntTSL 3 BASIC11.35□□□□□ -0.59
Nkx3-1P97436 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC11.35□□□□□ -0.59
Nkx3-1P97436 Mospd4-201ENSMUST00000180618 576 ntBASIC11.35□□□□□ -0.59
Nkx3-1P97436 Gm27320-201ENSMUST00000184892 109 ntBASIC11.35□□□□□ -0.59
Nkx3-1P97436 Gm28085-201ENSMUST00000189281 1137 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Nkx3-1P97436 Gm28693-202ENSMUST00000190758 331 ntBASIC11.35□□□□□ -0.59
Nkx3-1P97436 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC11.35□□□□□ -0.59
Nkx3-1P97436 Gm6621-201ENSMUST00000193251 772 ntBASIC11.35□□□□□ -0.59
Nkx3-1P97436 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC11.35□□□□□ -0.59
Nkx3-1P97436 1810062G17Rik-201ENSMUST00000029268 911 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Nkx3-1P97436 Lsm11-202ENSMUST00000129820 6453 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Nkx3-1P97436 Pou5f2-201ENSMUST00000175955 1394 ntAPPRIS P1 BASIC11.35□□□□□ -0.59
Nkx3-1P97436 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Nkx3-1P97436 Gpd2-207ENSMUST00000169687 5745 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Nkx3-1P97436 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC11.35□□□□□ -0.59
Nkx3-1P97436 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Nkx3-1P97436 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Nkx3-1P97436 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Nkx3-1P97436 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Nkx3-1P97436 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC11.35□□□□□ -0.59
Nkx3-1P97436 Nrxn1-201ENSMUST00000054059 4697 ntTSL 5 BASIC11.35□□□□□ -0.59
Nkx3-1P97436 Smarca4-204ENSMUST00000174008 5405 ntAPPRIS ALT1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Nkx3-1P97436 Ilvbl-201ENSMUST00000105384 2329 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Nkx3-1P97436 Ilvbl-203ENSMUST00000218215 2331 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Nkx3-1P97436 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Nkx3-1P97436 Sirt3-210ENSMUST00000211179 1606 ntAPPRIS ALT2 TSL 5 BASIC11.35□□□□□ -0.59
Nkx3-1P97436 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Nkx3-1P97436 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Nkx3-1P97436 Ccdc94-201ENSMUST00000086869 1311 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Nkx3-1P97436 Nop53-201ENSMUST00000044158 3176 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx3-1P97436 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
Nkx3-1P97436 Fnbp1-209ENSMUST00000113562 4515 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx3-1P97436 Gm19461-205ENSMUST00000191207 2566 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx3-1P97436 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx3-1P97436 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC11.34□□□□□ -0.59
Nkx3-1P97436 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC11.34□□□□□ -0.59
Nkx3-1P97436 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx3-1P97436 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx3-1P97436 Cacna2d2-208ENSMUST00000170737 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx3-1P97436 Evx1os-201ENSMUST00000125305 2916 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx3-1P97436 Gm15897-201ENSMUST00000117770 1486 ntBASIC11.34□□□□□ -0.59
Nkx3-1P97436 Gm3756-201ENSMUST00000169182 1355 ntBASIC11.34□□□□□ -0.59
Nkx3-1P97436 Gm15808-201ENSMUST00000119046 604 ntBASIC11.34□□□□□ -0.59
Nkx3-1P97436 Gm4986-201ENSMUST00000119731 549 ntBASIC11.34□□□□□ -0.59
Nkx3-1P97436 Gm12539-201ENSMUST00000121549 1098 ntBASIC11.34□□□□□ -0.59
Nkx3-1P97436 Gm14381-201ENSMUST00000122105 414 ntBASIC11.34□□□□□ -0.59
Nkx3-1P97436 Mogat1-201ENSMUST00000012331 1178 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx3-1P97436 Gm14508-201ENSMUST00000127049 901 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx3-1P97436 Gm15046-201ENSMUST00000130153 408 ntTSL 3 BASIC11.34□□□□□ -0.59
Nkx3-1P97436 Gm3890-201ENSMUST00000182416 207 ntBASIC11.34□□□□□ -0.59
Nkx3-1P97436 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx3-1P97436 Gm37259-201ENSMUST00000193903 849 ntBASIC11.34□□□□□ -0.59
Nkx3-1P97436 1700045I11Rik-201ENSMUST00000194752 493 ntBASIC11.34□□□□□ -0.59
Nkx3-1P97436 Gm7046-201ENSMUST00000221351 977 ntBASIC11.34□□□□□ -0.59
Nkx3-1P97436 AC093022.1-201ENSMUST00000226949 1072 ntBASIC11.34□□□□□ -0.59
Nkx3-1P97436 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC11.34□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 34.8 ms