Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gm7278-201ENSMUST00000119836 1401 ntBASIC16.97■□□□□ 0.31
Col18a1P39061 Churc1-203ENSMUST00000126408 462 ntTSL 2 BASIC16.97■□□□□ 0.31
Col18a1P39061 Ighv2-1-201ENSMUST00000170946 353 ntBASIC16.97■□□□□ 0.31
Col18a1P39061 Gm37707-201ENSMUST00000195309 325 ntTSL 3 BASIC16.97■□□□□ 0.31
Col18a1P39061 Gm5100-201ENSMUST00000195631 589 ntBASIC16.97■□□□□ 0.31
Col18a1P39061 Rps12-208ENSMUST00000220070 494 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col18a1P39061 Gm19009-201ENSMUST00000223072 823 ntBASIC16.97■□□□□ 0.31
Col18a1P39061 Eny2-204ENSMUST00000226827 558 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
Col18a1P39061 Gm6685-201ENSMUST00000042595 764 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
Col18a1P39061 Gm6430-201ENSMUST00000054664 1248 ntBASIC16.97■□□□□ 0.31
Col18a1P39061 Tspan32-201ENSMUST00000009396 1582 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col18a1P39061 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col18a1P39061 Gm45342-201ENSMUST00000210903 1363 ntBASIC16.97■□□□□ 0.31
Col18a1P39061 Slc25a21-205ENSMUST00000217690 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col18a1P39061 P4ha1-202ENSMUST00000092512 2387 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Col18a1P39061 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col18a1P39061 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
Col18a1P39061 Gm16364-201ENSMUST00000153722 1313 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Col18a1P39061 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC16.97■□□□□ 0.31
Col18a1P39061 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col18a1P39061 Mak-202ENSMUST00000070193 2937 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Col18a1P39061 Pigq-209ENSMUST00000140304 1835 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Col18a1P39061 Rpl41-203ENSMUST00000176683 437 ntAPPRIS P2 TSL 2 BASIC16.97■□□□□ 0.31
Col18a1P39061 Ighv6-7-201ENSMUST00000193397 357 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
Col18a1P39061 Gm37800-202ENSMUST00000193667 553 ntTSL 3 BASIC16.97■□□□□ 0.31
Col18a1P39061 Gm44270-201ENSMUST00000203084 1234 ntBASIC16.97■□□□□ 0.31
Col18a1P39061 C530044C16Rik-202ENSMUST00000205217 1239 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Col18a1P39061 1700028J19Rik-201ENSMUST00000037220 1245 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col18a1P39061 Ist1-201ENSMUST00000034164 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col18a1P39061 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
Col18a1P39061 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Col18a1P39061 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Col18a1P39061 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Col18a1P39061 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Col18a1P39061 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Col18a1P39061 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC16.96■□□□□ 0.31
Col18a1P39061 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Col18a1P39061 4930486L24Rik-201ENSMUST00000091569 1432 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Col18a1P39061 n-R5s64-201ENSMUST00000102019 119 ntBASIC16.96■□□□□ 0.31
Col18a1P39061 Gm13916-201ENSMUST00000117368 628 ntBASIC16.96■□□□□ 0.31
Col18a1P39061 Gm12990-201ENSMUST00000120372 468 ntBASIC16.96■□□□□ 0.31
Col18a1P39061 Gm13263-201ENSMUST00000121271 838 ntBASIC16.96■□□□□ 0.31
Col18a1P39061 Gm13182-201ENSMUST00000122241 312 ntBASIC16.96■□□□□ 0.31
Col18a1P39061 Treml4-202ENSMUST00000125426 992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Col18a1P39061 Rnf181-212ENSMUST00000154098 969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Col18a1P39061 Gm15744-201ENSMUST00000161734 213 ntBASIC16.96■□□□□ 0.31
Col18a1P39061 Cd1d2-202ENSMUST00000192481 1131 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Col18a1P39061 A630035G10Rik-202ENSMUST00000194468 1065 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Col18a1P39061 Gm43610-201ENSMUST00000199117 365 ntBASIC16.96■□□□□ 0.31
Col18a1P39061 Prss52-201ENSMUST00000022537 1064 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Col18a1P39061 1700029P11Rik-201ENSMUST00000074608 1024 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
Col18a1P39061 Clec4b1-202ENSMUST00000078559 748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Col18a1P39061 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC16.96■□□□□ 0.31
Col18a1P39061 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Col18a1P39061 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
Col18a1P39061 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Col18a1P39061 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Col18a1P39061 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
Col18a1P39061 Dusp14-201ENSMUST00000018792 1571 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
Col18a1P39061 Styxl1-201ENSMUST00000053906 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Col18a1P39061 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC16.96■□□□□ 0.3
Col18a1P39061 Gm26685-201ENSMUST00000181831 2023 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
Col18a1P39061 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC16.95■□□□□ 0.3
Col18a1P39061 Gm5989-201ENSMUST00000096092 2077 ntBASIC16.95■□□□□ 0.3
Col18a1P39061 Gng12-205ENSMUST00000114226 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col18a1P39061 Smim1-204ENSMUST00000130175 477 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Col18a1P39061 Gm13609-201ENSMUST00000141023 589 ntTSL 3 BASIC16.95■□□□□ 0.3
Col18a1P39061 Zfp637-210ENSMUST00000164472 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col18a1P39061 Dpf3-206ENSMUST00000177959 1298 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Col18a1P39061 AC165260.2-203ENSMUST00000224237 336 ntBASIC16.95■□□□□ 0.3
Col18a1P39061 Odf3-201ENSMUST00000026555 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col18a1P39061 H1foo-201ENSMUST00000037831 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col18a1P39061 Prss51-201ENSMUST00000063785 961 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Col18a1P39061 Gm10334-201ENSMUST00000095999 876 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col18a1P39061 Gm5544-201ENSMUST00000098828 891 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Col18a1P39061 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC16.95■□□□□ 0.3
Col18a1P39061 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
Col18a1P39061 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col18a1P39061 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col18a1P39061 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col18a1P39061 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC16.95■□□□□ 0.3
Col18a1P39061 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Col18a1P39061 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col18a1P39061 Cfap161-201ENSMUST00000011298 1335 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col18a1P39061 4930453L07Rik-201ENSMUST00000209053 1439 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Col18a1P39061 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC16.95■□□□□ 0.3
Col18a1P39061 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Col18a1P39061 Anxa4-202ENSMUST00000113675 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col18a1P39061 Mrps17-204ENSMUST00000119604 1208 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col18a1P39061 Mdk-ps1-201ENSMUST00000119782 321 ntBASIC16.94■□□□□ 0.3
Col18a1P39061 Gm13822-201ENSMUST00000127563 346 ntTSL 3 BASIC16.94■□□□□ 0.3
Col18a1P39061 Snhg17-205ENSMUST00000151331 529 ntTSL 2 BASIC16.94■□□□□ 0.3
Col18a1P39061 4930535L15Rik-201ENSMUST00000175891 536 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Col18a1P39061 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col18a1P39061 Gm42657-201ENSMUST00000201746 211 ntBASIC16.94■□□□□ 0.3
Col18a1P39061 Gm45021-201ENSMUST00000204521 369 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Col18a1P39061 Isg20-206ENSMUST00000205981 834 ntTSL 3 BASIC16.94■□□□□ 0.3
Col18a1P39061 AC120394.2-201ENSMUST00000213905 702 ntTSL 5 BASIC16.94■□□□□ 0.3
Col18a1P39061 1700011B04Rik-212ENSMUST00000223526 889 ntTSL 5 BASIC16.94■□□□□ 0.3
Col18a1P39061 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms