Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 1700120C18Rik-201ENSMUST00000182952 985 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Msx1P13297 1700065I16Rik-202ENSMUST00000185477 813 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Msx1P13297 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC12.58□□□□□ -0.4
Msx1P13297 Gm37612-201ENSMUST00000193626 582 ntTSL 5 BASIC12.58□□□□□ -0.4
Msx1P13297 Gm38217-201ENSMUST00000194358 910 ntBASIC12.58□□□□□ -0.4
Msx1P13297 Gm38223-201ENSMUST00000194484 695 ntBASIC12.58□□□□□ -0.4
Msx1P13297 Gm40332-201ENSMUST00000199847 938 ntBASIC12.58□□□□□ -0.4
Msx1P13297 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Msx1P13297 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC12.58□□□□□ -0.4
Msx1P13297 AC139350.1-201ENSMUST00000227064 1594 ntBASIC12.58□□□□□ -0.4
Msx1P13297 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Msx1P13297 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Msx1P13297 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Msx1P13297 4933434M16Rik-202ENSMUST00000153429 1940 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Msx1P13297 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Msx1P13297 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Msx1P13297 2310026I22Rik-201ENSMUST00000180941 1300 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Msx1P13297 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Msx1P13297 Ankrd17-201ENSMUST00000014421 10458 ntAPPRIS P4 TSL 5 BASIC12.58□□□□□ -0.4
Msx1P13297 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Msx1P13297 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Msx1P13297 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Msx1P13297 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Msx1P13297 Gm12846-201ENSMUST00000120431 1373 ntBASIC12.57□□□□□ -0.4
Msx1P13297 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Msx1P13297 Setd1a-202ENSMUST00000047157 5927 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Msx1P13297 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Msx1P13297 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Msx1P13297 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Msx1P13297 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Msx1P13297 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Msx1P13297 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC12.57□□□□□ -0.4
Msx1P13297 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Msx1P13297 Ssh1-204ENSMUST00000159592 8436 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Msx1P13297 Golim4-208ENSMUST00000167078 2902 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Msx1P13297 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Msx1P13297 Gm20632-201ENSMUST00000176760 2427 ntBASIC12.57□□□□□ -0.4
Msx1P13297 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Msx1P13297 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Msx1P13297 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Msx1P13297 Brd4-201ENSMUST00000003726 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Msx1P13297 Gm11008-201ENSMUST00000109032 622 ntTSL 5 BASIC12.57□□□□□ -0.4
Msx1P13297 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC12.57□□□□□ -0.4
Msx1P13297 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC12.57□□□□□ -0.4
Msx1P13297 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Msx1P13297 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Msx1P13297 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Msx1P13297 Ube2m-208ENSMUST00000165394 1228 ntTSL 5 BASIC12.57□□□□□ -0.4
Msx1P13297 Gm38241-201ENSMUST00000192641 898 ntBASIC12.57□□□□□ -0.4
Msx1P13297 Gm43244-201ENSMUST00000196994 1285 ntBASIC12.57□□□□□ -0.4
Msx1P13297 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Msx1P13297 Gm18056-201ENSMUST00000207670 568 ntBASIC12.57□□□□□ -0.4
Msx1P13297 Gm18061-201ENSMUST00000208350 562 ntBASIC12.57□□□□□ -0.4
Msx1P13297 Gm18063-201ENSMUST00000208529 568 ntBASIC12.57□□□□□ -0.4
Msx1P13297 Gm18052-201ENSMUST00000208750 559 ntBASIC12.57□□□□□ -0.4
Msx1P13297 Gm18473-201ENSMUST00000220543 868 ntBASIC12.57□□□□□ -0.4
Msx1P13297 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Msx1P13297 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Msx1P13297 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Msx1P13297 Gm13075-202ENSMUST00000149247 1621 ntTSL 5 BASIC12.57□□□□□ -0.4
Msx1P13297 Luc7l3-209ENSMUST00000166312 5244 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Msx1P13297 Col22a1-202ENSMUST00000159993 8809 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Msx1P13297 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Msx1P13297 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Msx1P13297 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC12.57□□□□□ -0.4
Msx1P13297 Cacna2d2-208ENSMUST00000170737 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Msx1P13297 Arid1b-202ENSMUST00000115797 11325 ntAPPRIS P2 TSL 5 BASIC12.57□□□□□ -0.4
Msx1P13297 Otop3-202ENSMUST00000106543 2369 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Msx1P13297 Tjap1-203ENSMUST00000180283 2368 ntAPPRIS P2 TSL 5 BASIC12.57□□□□□ -0.4
Msx1P13297 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Msx1P13297 Arhgap33-203ENSMUST00000207858 4337 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Msx1P13297 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Msx1P13297 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Msx1P13297 Chtop-205ENSMUST00000107343 3118 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Msx1P13297 AC154262.2-201ENSMUST00000224310 2293 ntBASIC12.57□□□□□ -0.4
Msx1P13297 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Msx1P13297 Map7d1-201ENSMUST00000061143 3351 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Msx1P13297 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Msx1P13297 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Msx1P13297 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Msx1P13297 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Msx1P13297 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Msx1P13297 Per1-206ENSMUST00000166748 4636 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Msx1P13297 Prss47-204ENSMUST00000222769 1406 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Msx1P13297 Bach2-202ENSMUST00000108180 8882 ntAPPRIS P2 TSL 5 BASIC12.56□□□□□ -0.4
Msx1P13297 Gm7324-201ENSMUST00000094051 1647 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Msx1P13297 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Msx1P13297 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Msx1P13297 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Msx1P13297 4933409G03Rik-201ENSMUST00000102713 1263 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Msx1P13297 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Msx1P13297 Gm11803-201ENSMUST00000119966 444 ntBASIC12.56□□□□□ -0.4
Msx1P13297 Gm16177-201ENSMUST00000120728 718 ntBASIC12.56□□□□□ -0.4
Msx1P13297 Rbm48-202ENSMUST00000121877 617 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Msx1P13297 Ablim2-213ENSMUST00000150146 415 ntTSL 2 BASIC12.56□□□□□ -0.4
Msx1P13297 Mb-202ENSMUST00000166179 1056 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Msx1P13297 Mb-203ENSMUST00000169226 1106 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Msx1P13297 Gm9124-201ENSMUST00000191789 1092 ntBASIC12.56□□□□□ -0.4
Msx1P13297 Gm9113-201ENSMUST00000192510 1018 ntBASIC12.56□□□□□ -0.4
Msx1P13297 Gm30667-201ENSMUST00000193120 870 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms