Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gm26474-201ENSMUST00000116762 122 ntBASIC10.34□□□□□ -0.75
Hoxd3P09027 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC10.34□□□□□ -0.75
Hoxd3P09027 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC10.34□□□□□ -0.75
Hoxd3P09027 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Hoxd3P09027 Gm3764-203ENSMUST00000180635 1191 ntTSL 5 BASIC10.34□□□□□ -0.75
Hoxd3P09027 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC10.34□□□□□ -0.75
Hoxd3P09027 1700065O20Rik-201ENSMUST00000186872 710 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Hoxd3P09027 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC10.34□□□□□ -0.75
Hoxd3P09027 Gm44607-201ENSMUST00000205611 1090 ntBASIC10.34□□□□□ -0.75
Hoxd3P09027 Chd3os-203ENSMUST00000218008 1026 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Hoxd3P09027 Gm8598-201ENSMUST00000221184 836 ntBASIC10.34□□□□□ -0.75
Hoxd3P09027 Rpl17-ps6-201ENSMUST00000222192 532 ntBASIC10.34□□□□□ -0.75
Hoxd3P09027 AC154848.1-201ENSMUST00000225451 846 ntBASIC10.34□□□□□ -0.75
Hoxd3P09027 Olfr851-201ENSMUST00000064582 939 ntAPPRIS P1 BASIC10.34□□□□□ -0.75
Hoxd3P09027 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC10.34□□□□□ -0.75
Hoxd3P09027 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC10.34□□□□□ -0.75
Hoxd3P09027 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC10.34□□□□□ -0.75
Hoxd3P09027 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Hoxd3P09027 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Hoxd3P09027 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Hoxd3P09027 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Hoxd3P09027 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Hoxd3P09027 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Hoxd3P09027 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Hoxd3P09027 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Hoxd3P09027 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC10.34□□□□□ -0.75
Hoxd3P09027 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC10.34□□□□□ -0.75
Hoxd3P09027 Glud1-201ENSMUST00000022322 3390 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Hoxd3P09027 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC10.34□□□□□ -0.75
Hoxd3P09027 Sema3d-201ENSMUST00000030868 6307 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Hoxd3P09027 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC10.33□□□□□ -0.75
Hoxd3P09027 Gm42941-201ENSMUST00000200347 1321 ntBASIC10.33□□□□□ -0.76
Hoxd3P09027 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hoxd3P09027 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Hoxd3P09027 Sh3kbp1-206ENSMUST00000112456 7317 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hoxd3P09027 Hspa12b-201ENSMUST00000099349 3413 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hoxd3P09027 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hoxd3P09027 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hoxd3P09027 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hoxd3P09027 Cluh-201ENSMUST00000092915 5379 ntAPPRIS P2 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hoxd3P09027 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hoxd3P09027 Gm37133-201ENSMUST00000192705 1922 ntBASIC10.33□□□□□ -0.76
Hoxd3P09027 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Hoxd3P09027 Gm38197-201ENSMUST00000192320 2122 ntBASIC10.33□□□□□ -0.76
Hoxd3P09027 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC10.33□□□□□ -0.76
Hoxd3P09027 Fchsd1-201ENSMUST00000043437 4270 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hoxd3P09027 Palld-204ENSMUST00000121785 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hoxd3P09027 Smim14-205ENSMUST00000139122 4560 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hoxd3P09027 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC10.33□□□□□ -0.76
Hoxd3P09027 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hoxd3P09027 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC10.33□□□□□ -0.76
Hoxd3P09027 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hoxd3P09027 Gm8213-201ENSMUST00000118191 441 ntBASIC10.33□□□□□ -0.76
Hoxd3P09027 Gm11803-201ENSMUST00000119966 444 ntBASIC10.33□□□□□ -0.76
Hoxd3P09027 1700012C14Rik-201ENSMUST00000132023 498 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Hoxd3P09027 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC10.33□□□□□ -0.76
Hoxd3P09027 Gm23757-201ENSMUST00000158353 100 ntBASIC10.33□□□□□ -0.76
Hoxd3P09027 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hoxd3P09027 AY702102-202ENSMUST00000194651 1173 ntBASIC10.33□□□□□ -0.76
Hoxd3P09027 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC10.33□□□□□ -0.76
Hoxd3P09027 Gm42474-201ENSMUST00000201073 505 ntBASIC10.33□□□□□ -0.76
Hoxd3P09027 Gm9299-201ENSMUST00000206392 1140 ntBASIC10.33□□□□□ -0.76
Hoxd3P09027 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hoxd3P09027 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC10.33□□□□□ -0.76
Hoxd3P09027 Ispd-205ENSMUST00000221895 4022 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Hoxd3P09027 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hoxd3P09027 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hoxd3P09027 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hoxd3P09027 Gm10040-201ENSMUST00000080726 1662 ntBASIC10.33□□□□□ -0.76
Hoxd3P09027 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Hoxd3P09027 Lipe-202ENSMUST00000054301 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hoxd3P09027 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hoxd3P09027 Ptpru-203ENSMUST00000105987 5484 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Hoxd3P09027 Kmt2e-201ENSMUST00000094962 7252 ntAPPRIS P1 TSL 5 BASIC10.33□□□□□ -0.76
Hoxd3P09027 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC10.33□□□□□ -0.76
Hoxd3P09027 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hoxd3P09027 Dnm1-201ENSMUST00000078352 3246 ntAPPRIS P2 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hoxd3P09027 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hoxd3P09027 Rapgef2-201ENSMUST00000118100 6573 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Hoxd3P09027 Ppl-201ENSMUST00000035672 6277 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hoxd3P09027 Asap1-217ENSMUST00000177371 6164 ntAPPRIS ALT2 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hoxd3P09027 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC10.33□□□□□ -0.76
Hoxd3P09027 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Hoxd3P09027 Prss47-204ENSMUST00000222769 1406 ntAPPRIS ALT2 TSL 5 BASIC10.33□□□□□ -0.76
Hoxd3P09027 AC136019.1-201ENSMUST00000226503 1412 ntBASIC10.33□□□□□ -0.76
Hoxd3P09027 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hoxd3P09027 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hoxd3P09027 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC10.32□□□□□ -0.76
Hoxd3P09027 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hoxd3P09027 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC10.32□□□□□ -0.76
Hoxd3P09027 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC10.32□□□□□ -0.76
Hoxd3P09027 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hoxd3P09027 Dhx57-201ENSMUST00000038166 4918 ntAPPRIS P3 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hoxd3P09027 Zbtb17-201ENSMUST00000006377 2722 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hoxd3P09027 Celrr-202ENSMUST00000181433 1561 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
Hoxd3P09027 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC10.32□□□□□ -0.76
Hoxd3P09027 Defb30-202ENSMUST00000111207 989 ntAPPRIS P2 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hoxd3P09027 Gm13226-201ENSMUST00000117838 404 ntBASIC10.32□□□□□ -0.76
Hoxd3P09027 Thegl-203ENSMUST00000118941 746 ntTSL 3 BASIC10.32□□□□□ -0.76
Hoxd3P09027 Gm25109-201ENSMUST00000122474 114 ntBASIC10.32□□□□□ -0.76
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms