Protein–RNA interactions for Protein: B9EHT4

Clip3, CAP-Gly domain-containing linker protein 3, mousemouse

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clip3B9EHT4 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC12.81□□□□□ -0.36
Clip3B9EHT4 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clip3B9EHT4 Cramp1l-201ENSMUST00000073337 7517 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clip3B9EHT4 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clip3B9EHT4 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clip3B9EHT4 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clip3B9EHT4 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clip3B9EHT4 Mir1894-201ENSMUST00000122802 81 ntBASIC12.81□□□□□ -0.36
Clip3B9EHT4 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Clip3B9EHT4 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Clip3B9EHT4 Gm17150-201ENSMUST00000165577 381 ntBASIC12.81□□□□□ -0.36
Clip3B9EHT4 Synj2bp-205ENSMUST00000169158 691 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Clip3B9EHT4 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Clip3B9EHT4 Gm6266-201ENSMUST00000203844 806 ntBASIC12.81□□□□□ -0.36
Clip3B9EHT4 Gm7067-201ENSMUST00000207698 1249 ntBASIC12.81□□□□□ -0.36
Clip3B9EHT4 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Clip3B9EHT4 Taldo1-201ENSMUST00000026576 1229 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clip3B9EHT4 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clip3B9EHT4 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clip3B9EHT4 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Clip3B9EHT4 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
Clip3B9EHT4 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clip3B9EHT4 Col6a3-208ENSMUST00000188587 8285 ntTSL 5 BASIC12.81□□□□□ -0.36
Clip3B9EHT4 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clip3B9EHT4 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clip3B9EHT4 Pcdhb22-202ENSMUST00000192409 6609 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Clip3B9EHT4 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
Clip3B9EHT4 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clip3B9EHT4 Fbxw17-201ENSMUST00000046974 1798 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clip3B9EHT4 Pygo2-202ENSMUST00000107413 2911 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Clip3B9EHT4 Ccpg1-208ENSMUST00000150826 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clip3B9EHT4 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clip3B9EHT4 Il17rd-203ENSMUST00000225146 3366 ntBASIC12.81□□□□□ -0.36
Clip3B9EHT4 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC12.81□□□□□ -0.36
Clip3B9EHT4 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clip3B9EHT4 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clip3B9EHT4 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC12.81□□□□□ -0.36
Clip3B9EHT4 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Clip3B9EHT4 Ilvbl-201ENSMUST00000105384 2329 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Clip3B9EHT4 Ist1-201ENSMUST00000034164 2304 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Clip3B9EHT4 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
Clip3B9EHT4 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Clip3B9EHT4 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Clip3B9EHT4 Acoxl-201ENSMUST00000028859 2842 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Clip3B9EHT4 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Clip3B9EHT4 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Clip3B9EHT4 Iws1-201ENSMUST00000025243 9613 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Clip3B9EHT4 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Clip3B9EHT4 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Clip3B9EHT4 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Clip3B9EHT4 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Clip3B9EHT4 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Clip3B9EHT4 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Clip3B9EHT4 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Clip3B9EHT4 Scd2-201ENSMUST00000026221 5453 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Clip3B9EHT4 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Clip3B9EHT4 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Clip3B9EHT4 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC12.8□□□□□ -0.36
Clip3B9EHT4 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Clip3B9EHT4 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC12.8□□□□□ -0.36
Clip3B9EHT4 Far2os1-201ENSMUST00000162391 555 ntTSL 2 BASIC12.8□□□□□ -0.36
Clip3B9EHT4 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Clip3B9EHT4 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Clip3B9EHT4 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC12.8□□□□□ -0.36
Clip3B9EHT4 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Clip3B9EHT4 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Clip3B9EHT4 Gm27486-201ENSMUST00000184923 80 ntBASIC12.8□□□□□ -0.36
Clip3B9EHT4 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC12.8□□□□□ -0.36
Clip3B9EHT4 AC153962.4-201ENSMUST00000217878 242 ntBASIC12.8□□□□□ -0.36
Clip3B9EHT4 Ppp1r14d-201ENSMUST00000076084 787 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Clip3B9EHT4 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Clip3B9EHT4 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Clip3B9EHT4 Zbtb25-205ENSMUST00000176509 1591 ntTSL 2 BASIC12.8□□□□□ -0.36
Clip3B9EHT4 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Clip3B9EHT4 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC12.8□□□□□ -0.36
Clip3B9EHT4 Ncan-201ENSMUST00000002412 7195 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Clip3B9EHT4 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC12.8□□□□□ -0.36
Clip3B9EHT4 Pkp1-201ENSMUST00000027667 4669 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Clip3B9EHT4 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Clip3B9EHT4 Sgk1-204ENSMUST00000120509 3096 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Clip3B9EHT4 Nup62cl-201ENSMUST00000101212 1996 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Clip3B9EHT4 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Clip3B9EHT4 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Clip3B9EHT4 Cacna1c-225ENSMUST00000219223 7483 ntTSL 5 BASIC12.79□□□□□ -0.36
Clip3B9EHT4 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Clip3B9EHT4 Gm5779-202ENSMUST00000219564 1477 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Clip3B9EHT4 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Clip3B9EHT4 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Clip3B9EHT4 Asphd2-201ENSMUST00000031291 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Clip3B9EHT4 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Clip3B9EHT4 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC12.79□□□□□ -0.36
Clip3B9EHT4 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Clip3B9EHT4 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Clip3B9EHT4 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Clip3B9EHT4 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Clip3B9EHT4 Rpl9-203ENSMUST00000120094 680 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
Clip3B9EHT4 Egfl7-208ENSMUST00000149789 683 ntTSL 3 BASIC12.79□□□□□ -0.36
Clip3B9EHT4 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC12.79□□□□□ -0.36
Clip3B9EHT4 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC12.79□□□□□ -0.36
Clip3B9EHT4 Gm44397-201ENSMUST00000195950 113 ntBASIC12.79□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 90.1 ms