Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Smc1aQ9CU62 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Smc1aQ9CU62 Hnrnph2-202ENSMUST00000059297 2364 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Smc1aQ9CU62 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Smc1aQ9CU62 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Smc1aQ9CU62 Cdadc1-201ENSMUST00000022555 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Smc1aQ9CU62 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Smc1aQ9CU62 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Smc1aQ9CU62 Fhl2-202ENSMUST00000185893 1421 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Smc1aQ9CU62 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC14.75□□□□□ -0.05
Smc1aQ9CU62 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Smc1aQ9CU62 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
Smc1aQ9CU62 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Smc1aQ9CU62 Dhx37-201ENSMUST00000169485 4760 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Smc1aQ9CU62 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Smc1aQ9CU62 Pcdhgc3-201ENSMUST00000076807 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Smc1aQ9CU62 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC14.75□□□□□ -0.05
Smc1aQ9CU62 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Smc1aQ9CU62 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC14.75□□□□□ -0.05
Smc1aQ9CU62 Gm15240-201ENSMUST00000118156 720 ntBASIC14.75□□□□□ -0.05
Smc1aQ9CU62 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Smc1aQ9CU62 Surf2-201ENSMUST00000015017 1203 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Smc1aQ9CU62 Gm27486-201ENSMUST00000184923 80 ntBASIC14.75□□□□□ -0.05
Smc1aQ9CU62 Gm7067-201ENSMUST00000207698 1249 ntBASIC14.75□□□□□ -0.05
Smc1aQ9CU62 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Smc1aQ9CU62 Gm9803-202ENSMUST00000216543 456 ntTSL 5 BASIC14.75□□□□□ -0.05
Smc1aQ9CU62 AC131690.1-201ENSMUST00000218406 374 ntBASIC14.75□□□□□ -0.05
Smc1aQ9CU62 AC125117.1-201ENSMUST00000228121 468 ntBASIC14.75□□□□□ -0.05
Smc1aQ9CU62 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
Smc1aQ9CU62 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
Smc1aQ9CU62 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Smc1aQ9CU62 Inpp5e-205ENSMUST00000145701 4147 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Smc1aQ9CU62 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Smc1aQ9CU62 Gm26841-201ENSMUST00000180725 1787 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Smc1aQ9CU62 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Smc1aQ9CU62 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Smc1aQ9CU62 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Smc1aQ9CU62 Gm20633-201ENSMUST00000176742 2831 ntBASIC14.74□□□□□ -0.05
Smc1aQ9CU62 AW822073-202ENSMUST00000204003 1959 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
Smc1aQ9CU62 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Smc1aQ9CU62 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Smc1aQ9CU62 Tmem206-201ENSMUST00000027940 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Smc1aQ9CU62 AC115735.4-201ENSMUST00000227460 1944 ntBASIC14.74□□□□□ -0.05
Smc1aQ9CU62 Pgpep1-201ENSMUST00000070173 4883 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Smc1aQ9CU62 Il13ra1-201ENSMUST00000033418 3712 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Smc1aQ9CU62 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
Smc1aQ9CU62 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Smc1aQ9CU62 Sv2b-202ENSMUST00000165175 5524 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Smc1aQ9CU62 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Smc1aQ9CU62 Mpp3-204ENSMUST00000107168 3094 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
Smc1aQ9CU62 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
Smc1aQ9CU62 Pmepa1os-201ENSMUST00000150185 680 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Smc1aQ9CU62 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Smc1aQ9CU62 Ube2i-205ENSMUST00000172587 508 ntTSL 2 BASIC14.74□□□□□ -0.05
Smc1aQ9CU62 Gm38319-201ENSMUST00000194537 1266 ntBASIC14.74□□□□□ -0.05
Smc1aQ9CU62 Gm18027-201ENSMUST00000218947 619 ntBASIC14.74□□□□□ -0.05
Smc1aQ9CU62 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Smc1aQ9CU62 Swi5-201ENSMUST00000050410 775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Smc1aQ9CU62 Atp5h-202ENSMUST00000073791 659 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
Smc1aQ9CU62 Gm12020-201ENSMUST00000119030 2042 ntBASIC14.74□□□□□ -0.05
Smc1aQ9CU62 Pck2-205ENSMUST00000226352 2784 ntBASIC14.74□□□□□ -0.05
Smc1aQ9CU62 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
Smc1aQ9CU62 Cacna1g-208ENSMUST00000107790 8035 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Smc1aQ9CU62 Dlgap3-203ENSMUST00000106094 4207 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Smc1aQ9CU62 Gm1113-201ENSMUST00000183573 2434 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
Smc1aQ9CU62 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Smc1aQ9CU62 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Smc1aQ9CU62 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Smc1aQ9CU62 Vcl-201ENSMUST00000022369 5267 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Smc1aQ9CU62 Pcdhb18-201ENSMUST00000055949 5041 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
Smc1aQ9CU62 Rsbn1-201ENSMUST00000051139 4762 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Smc1aQ9CU62 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC14.74□□□□□ -0.05
Smc1aQ9CU62 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
Smc1aQ9CU62 AC125108.1-201ENSMUST00000218986 2330 ntBASIC14.74□□□□□ -0.05
Smc1aQ9CU62 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC14.74□□□□□ -0.05
Smc1aQ9CU62 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
Smc1aQ9CU62 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
Smc1aQ9CU62 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Smc1aQ9CU62 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Smc1aQ9CU62 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Smc1aQ9CU62 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Smc1aQ9CU62 Adamts7-207ENSMUST00000147250 4833 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Smc1aQ9CU62 Kif13b-201ENSMUST00000100473 5603 ntAPPRIS P2 TSL 5 BASIC14.73□□□□□ -0.05
Smc1aQ9CU62 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Smc1aQ9CU62 Dars2-201ENSMUST00000035430 3619 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Smc1aQ9CU62 Mup-ps23-201ENSMUST00000118063 630 ntBASIC14.73□□□□□ -0.05
Smc1aQ9CU62 Mrpl40-202ENSMUST00000119273 778 ntTSL 3 BASIC14.73□□□□□ -0.05
Smc1aQ9CU62 Mthfsd-206ENSMUST00000133037 1060 ntTSL 5 BASIC14.73□□□□□ -0.05
Smc1aQ9CU62 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC14.73□□□□□ -0.05
Smc1aQ9CU62 Fam24a-203ENSMUST00000207784 600 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Smc1aQ9CU62 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
Smc1aQ9CU62 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Smc1aQ9CU62 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
Smc1aQ9CU62 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Smc1aQ9CU62 Ttll3-206ENSMUST00000204026 1472 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Smc1aQ9CU62 AC131068.2-201ENSMUST00000226175 1453 ntBASIC14.73□□□□□ -0.05
Smc1aQ9CU62 Lzts3-202ENSMUST00000089561 4169 ntAPPRIS P3 TSL 5 BASIC14.73□□□□□ -0.05
Smc1aQ9CU62 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC14.73□□□□□ -0.05
Smc1aQ9CU62 Mrpl44-201ENSMUST00000027464 1424 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Smc1aQ9CU62 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 34.5 ms