Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trim56Q80VI1 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trim56Q80VI1 Trpm4-201ENSMUST00000042194 4234 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trim56Q80VI1 Enc1-201ENSMUST00000041623 4737 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trim56Q80VI1 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trim56Q80VI1 Nfic-202ENSMUST00000078185 3163 ntTSL 5 BASIC15.52■□□□□ 0.08
Trim56Q80VI1 Dcaf4-208ENSMUST00000223291 2005 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trim56Q80VI1 Mir874-201ENSMUST00000104769 76 ntBASIC15.52■□□□□ 0.08
Trim56Q80VI1 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC15.52■□□□□ 0.08
Trim56Q80VI1 Gm12363-201ENSMUST00000122250 668 ntBASIC15.52■□□□□ 0.08
Trim56Q80VI1 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC15.52■□□□□ 0.08
Trim56Q80VI1 Gm2231-201ENSMUST00000125661 612 ntBASIC15.52■□□□□ 0.08
Trim56Q80VI1 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
Trim56Q80VI1 Gm45711-202ENSMUST00000164175 979 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
Trim56Q80VI1 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
Trim56Q80VI1 A330069E16Rik-201ENSMUST00000181191 887 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Trim56Q80VI1 Gm26927-201ENSMUST00000182385 965 ntBASIC15.52■□□□□ 0.08
Trim56Q80VI1 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC15.52■□□□□ 0.08
Trim56Q80VI1 AY702102-202ENSMUST00000194651 1173 ntBASIC15.52■□□□□ 0.08
Trim56Q80VI1 Gm38297-201ENSMUST00000195122 1057 ntBASIC15.52■□□□□ 0.08
Trim56Q80VI1 Gm19931-201ENSMUST00000198920 368 ntBASIC15.52■□□□□ 0.08
Trim56Q80VI1 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC15.52■□□□□ 0.08
Trim56Q80VI1 Ifitm10-202ENSMUST00000084412 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trim56Q80VI1 Gm10268-201ENSMUST00000085340 555 ntBASIC15.52■□□□□ 0.08
Trim56Q80VI1 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trim56Q80VI1 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trim56Q80VI1 Tmprss11d-202ENSMUST00000122377 2256 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Trim56Q80VI1 Gm10561-201ENSMUST00000181563 1943 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Trim56Q80VI1 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trim56Q80VI1 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Trim56Q80VI1 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC15.52■□□□□ 0.07
Trim56Q80VI1 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Trim56Q80VI1 Gm5939-201ENSMUST00000119613 2874 ntBASIC15.52■□□□□ 0.07
Trim56Q80VI1 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trim56Q80VI1 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC15.52■□□□□ 0.07
Trim56Q80VI1 Pik3c2b-201ENSMUST00000077730 7928 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
Trim56Q80VI1 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trim56Q80VI1 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Trim56Q80VI1 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC15.52■□□□□ 0.07
Trim56Q80VI1 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trim56Q80VI1 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC15.51■□□□□ 0.07
Trim56Q80VI1 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
Trim56Q80VI1 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC15.51■□□□□ 0.07
Trim56Q80VI1 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trim56Q80VI1 CT009713.10-201ENSMUST00000225013 1986 ntBASIC15.51■□□□□ 0.07
Trim56Q80VI1 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trim56Q80VI1 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trim56Q80VI1 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trim56Q80VI1 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
Trim56Q80VI1 Mettl17-201ENSMUST00000047899 1623 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trim56Q80VI1 AC238940.1-201ENSMUST00000225106 1858 ntBASIC15.51■□□□□ 0.07
Trim56Q80VI1 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trim56Q80VI1 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trim56Q80VI1 Mir686-201ENSMUST00000102174 109 ntBASIC15.51■□□□□ 0.07
Trim56Q80VI1 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trim56Q80VI1 Zfp709-202ENSMUST00000188374 717 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Trim56Q80VI1 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Trim56Q80VI1 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trim56Q80VI1 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trim56Q80VI1 Ccdc113-201ENSMUST00000041569 1288 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trim56Q80VI1 Prss2-201ENSMUST00000070380 815 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trim56Q80VI1 Olfr1423-201ENSMUST00000087831 933 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
Trim56Q80VI1 Cpq-207ENSMUST00000228916 1842 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
Trim56Q80VI1 Baiap2l1-201ENSMUST00000055190 3247 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trim56Q80VI1 Syngr2-201ENSMUST00000026649 1520 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trim56Q80VI1 Rusc2-207ENSMUST00000131668 5093 ntTSL 5 BASIC15.51■□□□□ 0.07
Trim56Q80VI1 Pigh-201ENSMUST00000072154 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trim56Q80VI1 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC15.51■□□□□ 0.07
Trim56Q80VI1 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Trim56Q80VI1 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Trim56Q80VI1 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trim56Q80VI1 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trim56Q80VI1 Fnbp1-209ENSMUST00000113562 4515 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Trim56Q80VI1 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Trim56Q80VI1 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC15.5■□□□□ 0.07
Trim56Q80VI1 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Trim56Q80VI1 Col9a3-201ENSMUST00000103059 2846 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trim56Q80VI1 Gm9025-201ENSMUST00000122415 1575 ntBASIC15.5■□□□□ 0.07
Trim56Q80VI1 AC113060.1-201ENSMUST00000225689 1573 ntBASIC15.5■□□□□ 0.07
Trim56Q80VI1 Ccdc94-201ENSMUST00000086869 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trim56Q80VI1 Lingo1-202ENSMUST00000114247 2287 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Trim56Q80VI1 Atat1-212ENSMUST00000141662 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trim56Q80VI1 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trim56Q80VI1 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Trim56Q80VI1 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC15.5■□□□□ 0.07
Trim56Q80VI1 Isg20-204ENSMUST00000121645 1087 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Trim56Q80VI1 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Trim56Q80VI1 1700012C14Rik-201ENSMUST00000132023 498 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Trim56Q80VI1 Gm2639-201ENSMUST00000156881 1297 ntBASIC15.5■□□□□ 0.07
Trim56Q80VI1 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC15.5■□□□□ 0.07
Trim56Q80VI1 AC166051.1-201ENSMUST00000214313 210 ntBASIC15.5■□□□□ 0.07
Trim56Q80VI1 Pfdn1-201ENSMUST00000025204 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trim56Q80VI1 Gm9955-201ENSMUST00000067987 309 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
Trim56Q80VI1 Gm26577-201ENSMUST00000180680 2184 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Trim56Q80VI1 Elp4-202ENSMUST00000122965 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trim56Q80VI1 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Trim56Q80VI1 Gm8798-201ENSMUST00000211877 1661 ntBASIC15.5■□□□□ 0.07
Trim56Q80VI1 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trim56Q80VI1 Pex12-207ENSMUST00000176518 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trim56Q80VI1 Vax2os-201ENSMUST00000123402 1435 ntTSL 5 BASIC15.5■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 81.5 ms