Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Limch1Q3UH68 Tmem2-202ENSMUST00000096194 6667 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
Limch1Q3UH68 Eme1-201ENSMUST00000039949 2444 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Limch1Q3UH68 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Limch1Q3UH68 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
Limch1Q3UH68 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Limch1Q3UH68 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Limch1Q3UH68 Gns-201ENSMUST00000040344 3855 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Limch1Q3UH68 Pnpla5-201ENSMUST00000019012 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Limch1Q3UH68 Ifi47-201ENSMUST00000046704 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Limch1Q3UH68 Ces2e-202ENSMUST00000109410 1999 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Limch1Q3UH68 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC15.51■□□□□ 0.07
Limch1Q3UH68 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
Limch1Q3UH68 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Limch1Q3UH68 Retsat-205ENSMUST00000176364 1647 ntTSL 5 BASIC15.51■□□□□ 0.07
Limch1Q3UH68 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Limch1Q3UH68 Renbp-209ENSMUST00000155597 1310 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
Limch1Q3UH68 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Limch1Q3UH68 Vldlr-207ENSMUST00000167487 7971 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
Limch1Q3UH68 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Limch1Q3UH68 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Limch1Q3UH68 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Limch1Q3UH68 Rpl9-203ENSMUST00000120094 680 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
Limch1Q3UH68 Neat1-203ENSMUST00000174829 1030 ntTSL 5 BASIC15.51■□□□□ 0.07
Limch1Q3UH68 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
Limch1Q3UH68 Gm29608-201ENSMUST00000190444 463 ntBASIC15.51■□□□□ 0.07
Limch1Q3UH68 Gm42902-201ENSMUST00000199508 662 ntTSL 5 BASIC15.51■□□□□ 0.07
Limch1Q3UH68 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Limch1Q3UH68 Gm45706-201ENSMUST00000213063 2136 ntBASIC15.51■□□□□ 0.07
Limch1Q3UH68 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Limch1Q3UH68 Xpr1-203ENSMUST00000111775 4094 ntTSL 5 BASIC15.51■□□□□ 0.07
Limch1Q3UH68 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Limch1Q3UH68 Abcg4-208ENSMUST00000161354 3999 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Limch1Q3UH68 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Limch1Q3UH68 Stk33-204ENSMUST00000121748 2295 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Limch1Q3UH68 Vangl1-201ENSMUST00000029453 6531 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Limch1Q3UH68 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
Limch1Q3UH68 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
Limch1Q3UH68 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Limch1Q3UH68 Gm26770-201ENSMUST00000180586 2237 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Limch1Q3UH68 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Limch1Q3UH68 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
Limch1Q3UH68 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Limch1Q3UH68 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Limch1Q3UH68 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Limch1Q3UH68 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC15.5■□□□□ 0.07
Limch1Q3UH68 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Limch1Q3UH68 Sirt2-201ENSMUST00000072965 1843 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
Limch1Q3UH68 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
Limch1Q3UH68 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
Limch1Q3UH68 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Limch1Q3UH68 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Limch1Q3UH68 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Limch1Q3UH68 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Limch1Q3UH68 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Limch1Q3UH68 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
Limch1Q3UH68 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC15.5■□□□□ 0.07
Limch1Q3UH68 Isg20-202ENSMUST00000118867 697 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
Limch1Q3UH68 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Limch1Q3UH68 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Limch1Q3UH68 Gm8652-201ENSMUST00000181363 964 ntBASIC15.5■□□□□ 0.07
Limch1Q3UH68 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC15.5■□□□□ 0.07
Limch1Q3UH68 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Limch1Q3UH68 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Limch1Q3UH68 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC15.5■□□□□ 0.07
Limch1Q3UH68 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Limch1Q3UH68 Commd1-201ENSMUST00000057843 1459 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Limch1Q3UH68 Serpinb6d-201ENSMUST00000059637 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Limch1Q3UH68 Abi1-201ENSMUST00000078977 3027 ntAPPRIS ALT1 TSL 5 BASIC15.5■□□□□ 0.07
Limch1Q3UH68 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Limch1Q3UH68 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Limch1Q3UH68 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Limch1Q3UH68 Gm5466-201ENSMUST00000119395 1890 ntBASIC15.5■□□□□ 0.07
Limch1Q3UH68 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Limch1Q3UH68 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Limch1Q3UH68 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Limch1Q3UH68 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Limch1Q3UH68 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Limch1Q3UH68 Wiz-201ENSMUST00000064694 2871 ntAPPRIS P4 TSL 1 (best) BASIC15.5■□□□□ 0.07
Limch1Q3UH68 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Limch1Q3UH68 Zfp595-205ENSMUST00000171466 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Limch1Q3UH68 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Limch1Q3UH68 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Limch1Q3UH68 Gm8994-202ENSMUST00000204530 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Limch1Q3UH68 Plcd3-201ENSMUST00000103077 3023 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Limch1Q3UH68 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Limch1Q3UH68 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
Limch1Q3UH68 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Limch1Q3UH68 Epb41-208ENSMUST00000105981 5303 ntAPPRIS P3 TSL 5 BASIC15.49■□□□□ 0.07
Limch1Q3UH68 Mier3-203ENSMUST00000109272 5279 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Limch1Q3UH68 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Limch1Q3UH68 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC15.49■□□□□ 0.07
Limch1Q3UH68 Zscan30-202ENSMUST00000224144 1458 ntBASIC15.49■□□□□ 0.07
Limch1Q3UH68 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC15.49■□□□□ 0.07
Limch1Q3UH68 Gm12416-201ENSMUST00000120911 1008 ntBASIC15.49■□□□□ 0.07
Limch1Q3UH68 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC15.49■□□□□ 0.07
Limch1Q3UH68 Snora78-201ENSMUST00000158630 128 ntBASIC15.49■□□□□ 0.07
Limch1Q3UH68 Snhg9-201ENSMUST00000161706 183 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Limch1Q3UH68 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
Limch1Q3UH68 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC15.49■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 76 ms