Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm5566-201ENSMUST00000116118 459 ntBASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Gm29667-201ENSMUST00000190817 490 ntBASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col28a1Q2UY11 AC090659.2-201ENSMUST00000225378 1186 ntBASIC12.82□□□□□ -0.36
Col28a1Q2UY11 AC154806.6-201ENSMUST00000228192 202 ntBASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Gm3695-201ENSMUST00000087222 1009 ntBASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Gm42829-201ENSMUST00000198417 2585 ntBASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Il13ra1-201ENSMUST00000033418 3712 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col28a1Q2UY11 St6gal1-201ENSMUST00000023601 4506 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Gm15222-202ENSMUST00000228667 1726 ntBASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Nhlh2-203ENSMUST00000198675 3943 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
Col28a1Q2UY11 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Golim4-202ENSMUST00000117242 4551 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Atp8a1-201ENSMUST00000037380 8178 ntAPPRIS P4 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Ehbp1l1-201ENSMUST00000049295 6404 ntAPPRIS P4 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Tfb2m-201ENSMUST00000027769 2449 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Hspb8-201ENSMUST00000036991 1816 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Dnajc5-202ENSMUST00000108796 934 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Gm6916-202ENSMUST00000205523 195 ntBASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Cdk7-205ENSMUST00000225990 1159 ntBASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Eme2-201ENSMUST00000119848 5226 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Gm5320-201ENSMUST00000207163 1519 ntBASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Ncor2-204ENSMUST00000111394 7452 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Gm6263-201ENSMUST00000120029 1342 ntBASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Kif13a-201ENSMUST00000056978 6866 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Rtn4-203ENSMUST00000102841 4060 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Zbtb2-202ENSMUST00000100078 3226 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Col28a1Q2UY11 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col28a1Q2UY11 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col28a1Q2UY11 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col28a1Q2UY11 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC12.8□□□□□ -0.36
Col28a1Q2UY11 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Col28a1Q2UY11 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col28a1Q2UY11 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col28a1Q2UY11 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col28a1Q2UY11 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col28a1Q2UY11 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col28a1Q2UY11 AC168058.1-201ENSMUST00000219521 2282 ntBASIC12.8□□□□□ -0.36
Col28a1Q2UY11 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col28a1Q2UY11 Mir1897-201ENSMUST00000122581 272 ntBASIC12.8□□□□□ -0.36
Col28a1Q2UY11 Meg3-208ENSMUST00000143847 706 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Col28a1Q2UY11 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC12.8□□□□□ -0.36
Col28a1Q2UY11 Gm23984-201ENSMUST00000157139 203 ntBASIC12.8□□□□□ -0.36
Col28a1Q2UY11 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Col28a1Q2UY11 Mir7221-201ENSMUST00000184009 72 ntBASIC12.8□□□□□ -0.36
Col28a1Q2UY11 Gm43433-201ENSMUST00000196573 481 ntBASIC12.8□□□□□ -0.36
Col28a1Q2UY11 AC238811.1-201ENSMUST00000225302 441 ntBASIC12.8□□□□□ -0.36
Col28a1Q2UY11 AC154239.3-201ENSMUST00000226933 674 ntBASIC12.8□□□□□ -0.36
Col28a1Q2UY11 2610528J11Rik-201ENSMUST00000030261 958 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col28a1Q2UY11 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Col28a1Q2UY11 Rgma-201ENSMUST00000094312 3586 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 25.8 ms