Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col6a1Q04857 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Col6a1Q04857 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC14.55□□□□□ -0.08
Col6a1Q04857 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Col6a1Q04857 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Col6a1Q04857 Pgm5-201ENSMUST00000047666 3239 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col6a1Q04857 Gm38577-201ENSMUST00000221531 4545 ntBASIC14.54□□□□□ -0.08
Col6a1Q04857 Gm12626-201ENSMUST00000117339 1983 ntBASIC14.54□□□□□ -0.08
Col6a1Q04857 Gm12623-201ENSMUST00000119849 1983 ntBASIC14.54□□□□□ -0.08
Col6a1Q04857 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Col6a1Q04857 Radil-201ENSMUST00000063635 3700 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col6a1Q04857 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col6a1Q04857 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col6a1Q04857 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col6a1Q04857 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col6a1Q04857 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Col6a1Q04857 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Col6a1Q04857 Adamts8-201ENSMUST00000068135 3631 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col6a1Q04857 Gm14350-201ENSMUST00000116642 640 ntBASIC14.54□□□□□ -0.08
Col6a1Q04857 Dusp13-204ENSMUST00000120984 976 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col6a1Q04857 Gm12566-201ENSMUST00000121479 359 ntBASIC14.54□□□□□ -0.08
Col6a1Q04857 Tnfrsf18-203ENSMUST00000122001 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col6a1Q04857 Endov-204ENSMUST00000129327 1184 ntTSL 5 BASIC14.54□□□□□ -0.08
Col6a1Q04857 Gm24548-201ENSMUST00000158650 108 ntBASIC14.54□□□□□ -0.08
Col6a1Q04857 Gm5523-201ENSMUST00000180415 997 ntBASIC14.54□□□□□ -0.08
Col6a1Q04857 Gm5869-201ENSMUST00000200248 1257 ntBASIC14.54□□□□□ -0.08
Col6a1Q04857 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC14.54□□□□□ -0.08
Col6a1Q04857 AC131690.1-201ENSMUST00000218406 374 ntBASIC14.54□□□□□ -0.08
Col6a1Q04857 AC022775.2-201ENSMUST00000227885 646 ntBASIC14.54□□□□□ -0.08
Col6a1Q04857 3300002I08Rik-201ENSMUST00000051153 650 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col6a1Q04857 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col6a1Q04857 Tspyl5-201ENSMUST00000042021 4010 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
Col6a1Q04857 Celrr-202ENSMUST00000181433 1561 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Col6a1Q04857 Spo11-203ENSMUST00000109126 1625 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Col6a1Q04857 Gm10040-201ENSMUST00000080726 1662 ntBASIC14.54□□□□□ -0.08
Col6a1Q04857 Luc7l3-209ENSMUST00000166312 5244 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Col6a1Q04857 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Col6a1Q04857 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Col6a1Q04857 Pde4d-203ENSMUST00000117420 1955 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Col6a1Q04857 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC14.54□□□□□ -0.08
Col6a1Q04857 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Col6a1Q04857 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC14.54□□□□□ -0.08
Col6a1Q04857 Foxo6os-201ENSMUST00000152384 2291 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Col6a1Q04857 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC14.54□□□□□ -0.08
Col6a1Q04857 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Col6a1Q04857 Il17rd-203ENSMUST00000225146 3366 ntBASIC14.54□□□□□ -0.08
Col6a1Q04857 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC14.54□□□□□ -0.08
Col6a1Q04857 Lrrc7-205ENSMUST00000200137 7321 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col6a1Q04857 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Col6a1Q04857 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Col6a1Q04857 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col6a1Q04857 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
Col6a1Q04857 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col6a1Q04857 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC14.53□□□□□ -0.08
Col6a1Q04857 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC14.53□□□□□ -0.08
Col6a1Q04857 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col6a1Q04857 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col6a1Q04857 Gpc5-201ENSMUST00000022707 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col6a1Q04857 Pltp-203ENSMUST00000109317 1575 ntTSL 5 BASIC14.53□□□□□ -0.08
Col6a1Q04857 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Col6a1Q04857 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Col6a1Q04857 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC14.53□□□□□ -0.08
Col6a1Q04857 Fbp1-201ENSMUST00000092888 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col6a1Q04857 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col6a1Q04857 Yap1-202ENSMUST00000086580 4115 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col6a1Q04857 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC14.53□□□□□ -0.08
Col6a1Q04857 Myl4-202ENSMUST00000106956 900 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col6a1Q04857 Stpg3-202ENSMUST00000114363 1234 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col6a1Q04857 Snx29-202ENSMUST00000115814 1125 ntTSL 5 BASIC14.53□□□□□ -0.08
Col6a1Q04857 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col6a1Q04857 Gm14726-201ENSMUST00000120623 896 ntBASIC14.53□□□□□ -0.08
Col6a1Q04857 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Col6a1Q04857 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col6a1Q04857 Gm18212-201ENSMUST00000211678 889 ntBASIC14.53□□□□□ -0.08
Col6a1Q04857 AC134254.1-201ENSMUST00000221362 167 ntBASIC14.53□□□□□ -0.08
Col6a1Q04857 Tatdn3-201ENSMUST00000027945 1196 ntAPPRIS ALT2 TSL 3 BASIC14.53□□□□□ -0.08
Col6a1Q04857 Psma1-201ENSMUST00000033008 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col6a1Q04857 Ctrb1-201ENSMUST00000034435 878 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col6a1Q04857 B430305J03Rik-201ENSMUST00000066298 3702 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
Col6a1Q04857 Unc5b-203ENSMUST00000218637 3653 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Col6a1Q04857 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col6a1Q04857 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC14.53□□□□□ -0.08
Col6a1Q04857 Ptprk-201ENSMUST00000166468 6177 ntAPPRIS P2 TSL 2 BASIC14.53□□□□□ -0.08
Col6a1Q04857 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col6a1Q04857 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Col6a1Q04857 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Col6a1Q04857 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Col6a1Q04857 Hectd1-202ENSMUST00000179265 9012 ntTSL 5 BASIC14.52□□□□□ -0.08
Col6a1Q04857 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col6a1Q04857 Bach2os-201ENSMUST00000126225 1661 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Col6a1Q04857 Morn1-201ENSMUST00000030915 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col6a1Q04857 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col6a1Q04857 Pcdha6-202ENSMUST00000193777 5367 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col6a1Q04857 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col6a1Q04857 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col6a1Q04857 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col6a1Q04857 Lamb2-201ENSMUST00000065014 5629 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Col6a1Q04857 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
Col6a1Q04857 Cd27-203ENSMUST00000112282 588 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Col6a1Q04857 Thoc6-203ENSMUST00000115489 1083 ntTSL 5 BASIC14.52□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms