Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
Nkx3-1P97436 AC139350.1-201ENSMUST00000227064 1594 ntBASIC11.38□□□□□ -0.59
Nkx3-1P97436 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Wnt3a-201ENSMUST00000010044 2761 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Vasp-201ENSMUST00000032561 2215 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Psap-202ENSMUST00000105465 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Trav4d-3-201ENSMUST00000103592 331 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Trav4d-4-201ENSMUST00000103600 354 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Trav4n-3-201ENSMUST00000103618 331 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Trav4n-4-201ENSMUST00000103627 354 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Trav4-3-201ENSMUST00000103655 411 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Trav4-4-dv10-201ENSMUST00000103663 361 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Gm11637-201ENSMUST00000120601 592 ntBASIC11.38□□□□□ -0.59
Nkx3-1P97436 Gm7809-201ENSMUST00000153199 742 ntBASIC11.38□□□□□ -0.59
Nkx3-1P97436 Rims3-204ENSMUST00000171363 977 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Gm2991-201ENSMUST00000173338 480 ntBASIC11.38□□□□□ -0.59
Nkx3-1P97436 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC11.38□□□□□ -0.59
Nkx3-1P97436 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Gm38158-201ENSMUST00000194617 339 ntBASIC11.38□□□□□ -0.59
Nkx3-1P97436 Gm33056-201ENSMUST00000213234 1120 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Gm8227-201ENSMUST00000223306 571 ntBASIC11.38□□□□□ -0.59
Nkx3-1P97436 AC022775.2-201ENSMUST00000227885 646 ntBASIC11.38□□□□□ -0.59
Nkx3-1P97436 Gm6169-201ENSMUST00000071118 1030 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Pxdn-202ENSMUST00000122328 6614 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Kif13b-201ENSMUST00000100473 5603 ntAPPRIS P2 TSL 5 BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Plod2-201ENSMUST00000070522 3649 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Mynn-202ENSMUST00000192715 5555 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Nkx3-1P97436 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Vmn1r198-203ENSMUST00000226909 6259 ntAPPRIS P2 BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Kif5a-201ENSMUST00000099172 6295 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Evl-203ENSMUST00000109854 1870 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Ncor2-204ENSMUST00000111394 7452 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Nkx3-1P97436 G2e3-201ENSMUST00000054308 6803 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Fbxo34-203ENSMUST00000163324 3132 ntAPPRIS ALT2 TSL 2 BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Zbtb1-201ENSMUST00000042779 12190 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Nkx3-1P97436 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Nkx3-1P97436 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Nkx3-1P97436 Gm8793-201ENSMUST00000183069 1303 ntBASIC11.37□□□□□ -0.59
Nkx3-1P97436 Gemin2-201ENSMUST00000021379 1588 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Nkx3-1P97436 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Nkx3-1P97436 Dnajc5-201ENSMUST00000072334 6578 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Nkx3-1P97436 Dysf-201ENSMUST00000081904 6660 ntAPPRIS P4 TSL 1 (best) BASIC11.37□□□□□ -0.59
Nkx3-1P97436 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Nkx3-1P97436 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Nkx3-1P97436 Ehbp1l1-201ENSMUST00000049295 6404 ntAPPRIS P4 TSL 1 (best) BASIC11.37□□□□□ -0.59
Nkx3-1P97436 Ssc5d-201ENSMUST00000057612 4348 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Nkx3-1P97436 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Nkx3-1P97436 Gm15236-201ENSMUST00000117309 379 ntBASIC11.37□□□□□ -0.59
Nkx3-1P97436 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Nkx3-1P97436 Gm26083-201ENSMUST00000157904 193 ntBASIC11.37□□□□□ -0.59
Nkx3-1P97436 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
Nkx3-1P97436 Gm7895-201ENSMUST00000187459 1173 ntBASIC11.37□□□□□ -0.59
Nkx3-1P97436 Gm37489-201ENSMUST00000191883 159 ntBASIC11.37□□□□□ -0.59
Nkx3-1P97436 Gm7118-201ENSMUST00000200167 1003 ntBASIC11.37□□□□□ -0.59
Nkx3-1P97436 Scoc-203ENSMUST00000212031 409 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
Nkx3-1P97436 AC122305.4-201ENSMUST00000216159 1206 ntBASIC11.37□□□□□ -0.59
Nkx3-1P97436 Ifi30-202ENSMUST00000222087 981 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Nkx3-1P97436 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC11.37□□□□□ -0.59
Nkx3-1P97436 AC134335.2-201ENSMUST00000227660 440 ntBASIC11.37□□□□□ -0.59
Nkx3-1P97436 Tsc22d4-201ENSMUST00000031738 1043 ntTSL 3 BASIC11.37□□□□□ -0.59
Nkx3-1P97436 1700007G11Rik-201ENSMUST00000080333 861 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Nkx3-1P97436 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Nkx3-1P97436 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Nkx3-1P97436 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Nkx3-1P97436 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
Nkx3-1P97436 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Nkx3-1P97436 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Nkx3-1P97436 Cidec-201ENSMUST00000032416 1703 ntAPPRIS P2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Nkx3-1P97436 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Nkx3-1P97436 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Nkx3-1P97436 Sbno2-209ENSMUST00000219260 4850 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
Nkx3-1P97436 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
Nkx3-1P97436 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC11.37□□□□□ -0.59
Nkx3-1P97436 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Nkx3-1P97436 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Nkx3-1P97436 Mfsd4b5-205ENSMUST00000170579 1554 ntAPPRIS P1 TSL 2 BASIC11.37□□□□□ -0.59
Nkx3-1P97436 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Nkx3-1P97436 Sdccag8-202ENSMUST00000056773 1551 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Nkx3-1P97436 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Nkx3-1P97436 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms