Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC13.92□□□□□ -0.18
Shmt1P50431 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC13.92□□□□□ -0.18
Shmt1P50431 Gm8565-201ENSMUST00000183259 1014 ntBASIC13.92□□□□□ -0.18
Shmt1P50431 Gm42693-201ENSMUST00000196779 631 ntBASIC13.92□□□□□ -0.18
Shmt1P50431 AC126253.1-201ENSMUST00000227974 824 ntBASIC13.92□□□□□ -0.18
Shmt1P50431 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Shmt1P50431 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Shmt1P50431 Otud6a-201ENSMUST00000060241 873 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
Shmt1P50431 Gm10478-201ENSMUST00000084451 396 ntBASIC13.92□□□□□ -0.18
Shmt1P50431 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Shmt1P50431 Eif4g3-215ENSMUST00000203828 5289 ntTSL 5 BASIC13.92□□□□□ -0.18
Shmt1P50431 Lamb2-201ENSMUST00000065014 5629 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Shmt1P50431 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
Shmt1P50431 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Shmt1P50431 Plch2-201ENSMUST00000105631 5053 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
Shmt1P50431 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Shmt1P50431 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Shmt1P50431 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
Shmt1P50431 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Shmt1P50431 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Shmt1P50431 Efhc1-201ENSMUST00000038447 2146 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Shmt1P50431 Fnbp1-209ENSMUST00000113562 4515 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Shmt1P50431 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Shmt1P50431 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Shmt1P50431 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Shmt1P50431 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Shmt1P50431 Unc5b-203ENSMUST00000218637 3653 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Shmt1P50431 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Shmt1P50431 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Shmt1P50431 AI593442-203ENSMUST00000213937 5674 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
Shmt1P50431 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
Shmt1P50431 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
Shmt1P50431 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC13.91□□□□□ -0.18
Shmt1P50431 Mrpl2-203ENSMUST00000113430 991 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
Shmt1P50431 Litaf-202ENSMUST00000117360 763 ntAPPRIS P1 TSL 3 BASIC13.91□□□□□ -0.18
Shmt1P50431 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC13.91□□□□□ -0.18
Shmt1P50431 Gm16479-201ENSMUST00000121706 932 ntBASIC13.91□□□□□ -0.18
Shmt1P50431 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Shmt1P50431 Gm42902-201ENSMUST00000199508 662 ntTSL 5 BASIC13.91□□□□□ -0.18
Shmt1P50431 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Shmt1P50431 Mien1-201ENSMUST00000002655 747 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Shmt1P50431 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Shmt1P50431 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Shmt1P50431 Tspyl5-201ENSMUST00000042021 4010 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
Shmt1P50431 Gm15459-201ENSMUST00000117405 1941 ntBASIC13.91□□□□□ -0.18
Shmt1P50431 Gm8355-201ENSMUST00000177767 1941 ntBASIC13.91□□□□□ -0.18
Shmt1P50431 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC13.91□□□□□ -0.18
Shmt1P50431 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
Shmt1P50431 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Shmt1P50431 Gm18244-201ENSMUST00000219747 1566 ntBASIC13.91□□□□□ -0.18
Shmt1P50431 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Shmt1P50431 Arhgap27os3-201ENSMUST00000124462 2729 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Shmt1P50431 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Shmt1P50431 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Shmt1P50431 Rnf214-205ENSMUST00000160699 2287 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
Shmt1P50431 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
Shmt1P50431 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
Shmt1P50431 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Shmt1P50431 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Shmt1P50431 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Shmt1P50431 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
Shmt1P50431 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC13.9□□□□□ -0.18
Shmt1P50431 Cox4i2-201ENSMUST00000010020 727 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Shmt1P50431 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC13.9□□□□□ -0.18
Shmt1P50431 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
Shmt1P50431 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC13.9□□□□□ -0.18
Shmt1P50431 Gm45331-201ENSMUST00000209868 554 ntBASIC13.9□□□□□ -0.18
Shmt1P50431 Snx24-201ENSMUST00000025417 994 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Shmt1P50431 Majin-201ENSMUST00000025699 1239 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Shmt1P50431 Mal-201ENSMUST00000028853 486 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Shmt1P50431 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Shmt1P50431 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Shmt1P50431 Dmkn-201ENSMUST00000041703 662 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Shmt1P50431 Olfr1234-202ENSMUST00000111543 1386 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
Shmt1P50431 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC13.9□□□□□ -0.18
Shmt1P50431 Gm8706-201ENSMUST00000197372 1491 ntBASIC13.9□□□□□ -0.18
Shmt1P50431 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Shmt1P50431 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
Shmt1P50431 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC13.9□□□□□ -0.18
Shmt1P50431 Gpc2-205ENSMUST00000161827 2586 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Shmt1P50431 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
Shmt1P50431 Mfsd14b-201ENSMUST00000054730 3251 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
Shmt1P50431 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
Shmt1P50431 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Shmt1P50431 Zbtb17-201ENSMUST00000006377 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Shmt1P50431 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC13.9□□□□□ -0.18
Shmt1P50431 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Shmt1P50431 Gm45332-201ENSMUST00000210508 1949 ntTSL 5 BASIC13.9□□□□□ -0.18
Shmt1P50431 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.19
Shmt1P50431 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
Shmt1P50431 Dlst-201ENSMUST00000053811 2764 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Shmt1P50431 A530013C23Rik-201ENSMUST00000130679 2555 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Shmt1P50431 Trpm4-201ENSMUST00000042194 4234 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Shmt1P50431 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Shmt1P50431 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
Shmt1P50431 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Shmt1P50431 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Shmt1P50431 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC13.89□□□□□ -0.19
Shmt1P50431 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Shmt1P50431 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms