Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cd40lgP27548 Btnl2-202ENSMUST00000178562 2563 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Cd40lgP27548 Btnl2-201ENSMUST00000025198 2564 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cd40lgP27548 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Cd40lgP27548 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
Cd40lgP27548 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
Cd40lgP27548 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC12.19□□□□□ -0.46
Cd40lgP27548 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC12.19□□□□□ -0.46
Cd40lgP27548 Gm15806-201ENSMUST00000120696 955 ntBASIC12.19□□□□□ -0.46
Cd40lgP27548 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC12.19□□□□□ -0.46
Cd40lgP27548 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Cd40lgP27548 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Cd40lgP27548 Gm17794-201ENSMUST00000220252 955 ntBASIC12.19□□□□□ -0.46
Cd40lgP27548 AC150560.1-201ENSMUST00000227731 1187 ntBASIC12.19□□□□□ -0.46
Cd40lgP27548 Txn1-201ENSMUST00000030051 1051 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cd40lgP27548 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cd40lgP27548 Tex13c3-201ENSMUST00000089246 876 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cd40lgP27548 Gm5356-201ENSMUST00000093326 615 ntBASIC12.19□□□□□ -0.46
Cd40lgP27548 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Cd40lgP27548 Map10-201ENSMUST00000053078 3542 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
Cd40lgP27548 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC12.19□□□□□ -0.46
Cd40lgP27548 Hk2-201ENSMUST00000000642 5513 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cd40lgP27548 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC12.19□□□□□ -0.46
Cd40lgP27548 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Cd40lgP27548 Gm5779-202ENSMUST00000219564 1477 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Cd40lgP27548 Rims1-204ENSMUST00000097810 6362 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Cd40lgP27548 D930019O06Rik-201ENSMUST00000181841 3663 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Cd40lgP27548 Podn-202ENSMUST00000106708 2947 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cd40lgP27548 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC12.19□□□□□ -0.46
Cd40lgP27548 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cd40lgP27548 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cd40lgP27548 Klhl8-203ENSMUST00000112815 2898 ntTSL 5 BASIC12.19□□□□□ -0.46
Cd40lgP27548 Rgs12-201ENSMUST00000030984 5472 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cd40lgP27548 Gm14455-201ENSMUST00000138288 2146 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Cd40lgP27548 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Cd40lgP27548 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Cd40lgP27548 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Cd40lgP27548 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Cd40lgP27548 Gm38355-201ENSMUST00000192514 1570 ntBASIC12.18□□□□□ -0.46
Cd40lgP27548 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cd40lgP27548 Txn2-203ENSMUST00000109747 1778 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Cd40lgP27548 Gm7114-201ENSMUST00000190159 1789 ntBASIC12.18□□□□□ -0.46
Cd40lgP27548 Gtf2i-203ENSMUST00000111261 4381 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Cd40lgP27548 Pfn4-204ENSMUST00000219503 4775 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Cd40lgP27548 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC12.18□□□□□ -0.46
Cd40lgP27548 Ngf-202ENSMUST00000106925 1187 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Cd40lgP27548 Gm10863-205ENSMUST00000148028 905 ntTSL 3 BASIC12.18□□□□□ -0.46
Cd40lgP27548 Pmepa1os-201ENSMUST00000150185 680 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Cd40lgP27548 Gm38144-201ENSMUST00000192790 465 ntBASIC12.18□□□□□ -0.46
Cd40lgP27548 Gm43568-203ENSMUST00000199116 1270 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Cd40lgP27548 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC12.18□□□□□ -0.46
Cd40lgP27548 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cd40lgP27548 Gm45059-201ENSMUST00000205558 1077 ntBASIC12.18□□□□□ -0.46
Cd40lgP27548 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Cd40lgP27548 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cd40lgP27548 Gm17330-201ENSMUST00000221047 165 ntBASIC12.18□□□□□ -0.46
Cd40lgP27548 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Cd40lgP27548 Ints6-202ENSMUST00000223585 10883 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Cd40lgP27548 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cd40lgP27548 Fam13b-201ENSMUST00000040506 3343 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cd40lgP27548 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Cd40lgP27548 Vps4b-202ENSMUST00000112736 4539 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cd40lgP27548 Rps6kb1-207ENSMUST00000154617 5531 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cd40lgP27548 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cd40lgP27548 Gm9816-201ENSMUST00000122292 1414 ntBASIC12.18□□□□□ -0.46
Cd40lgP27548 Wwtr1-201ENSMUST00000029380 4697 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cd40lgP27548 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Cd40lgP27548 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cd40lgP27548 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Cd40lgP27548 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cd40lgP27548 Asph-212ENSMUST00000108340 6646 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cd40lgP27548 Cyth4-201ENSMUST00000043069 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cd40lgP27548 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Cd40lgP27548 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Cd40lgP27548 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cd40lgP27548 Cdc37-201ENSMUST00000019615 7851 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cd40lgP27548 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC12.17□□□□□ -0.46
Cd40lgP27548 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cd40lgP27548 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Cd40lgP27548 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Cd40lgP27548 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Cd40lgP27548 Gm2420-202ENSMUST00000202224 2249 ntBASIC12.17□□□□□ -0.46
Cd40lgP27548 Rbak-201ENSMUST00000049861 3335 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cd40lgP27548 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cd40lgP27548 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Cd40lgP27548 Trpm4-209ENSMUST00000211743 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cd40lgP27548 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cd40lgP27548 Gm15376-201ENSMUST00000122258 783 ntBASIC12.17□□□□□ -0.46
Cd40lgP27548 Gm16342-201ENSMUST00000124025 1025 ntBASIC12.17□□□□□ -0.46
Cd40lgP27548 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Cd40lgP27548 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Cd40lgP27548 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Cd40lgP27548 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Cd40lgP27548 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Cd40lgP27548 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Cd40lgP27548 Gm20753-201ENSMUST00000190105 545 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Cd40lgP27548 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC12.17□□□□□ -0.46
Cd40lgP27548 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cd40lgP27548 Gm5519-201ENSMUST00000042061 513 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cd40lgP27548 Gm24447-201ENSMUST00000083977 338 ntBASIC12.17□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 34.6 ms