Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Lrp2bp-202ENSMUST00000110380 1603 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Lmx1bO88609 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Lmx1bO88609 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Lmx1bO88609 Crybg2-213ENSMUST00000227683 5578 ntAPPRIS ALT2 BASIC11.96□□□□□ -0.5
Lmx1bO88609 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Lmx1bO88609 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Lmx1bO88609 Ociad1-201ENSMUST00000031038 1523 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Lmx1bO88609 Cfap69-201ENSMUST00000054865 4956 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Lmx1bO88609 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Lmx1bO88609 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lmx1bO88609 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Lmx1bO88609 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Lmx1bO88609 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lmx1bO88609 Slc16a3-208ENSMUST00000168579 4335 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lmx1bO88609 Atxn2l-201ENSMUST00000040202 3853 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lmx1bO88609 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lmx1bO88609 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lmx1bO88609 Ddx31-201ENSMUST00000113853 3271 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lmx1bO88609 Gabrg3-202ENSMUST00000068911 9767 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lmx1bO88609 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC11.95□□□□□ -0.5
Lmx1bO88609 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lmx1bO88609 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
Lmx1bO88609 Vps35-201ENSMUST00000034131 3474 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lmx1bO88609 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Lmx1bO88609 Gm12384-201ENSMUST00000119228 919 ntBASIC11.95□□□□□ -0.5
Lmx1bO88609 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC11.95□□□□□ -0.5
Lmx1bO88609 Gm27572-201ENSMUST00000183702 255 ntBASIC11.95□□□□□ -0.5
Lmx1bO88609 1700065I16Rik-202ENSMUST00000185477 813 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Lmx1bO88609 Gm42693-201ENSMUST00000196779 631 ntBASIC11.95□□□□□ -0.5
Lmx1bO88609 Gm43763-201ENSMUST00000201761 683 ntTSL 3 BASIC11.95□□□□□ -0.5
Lmx1bO88609 Gabarapl1-204ENSMUST00000204956 539 ntAPPRIS P1 TSL 3 BASIC11.95□□□□□ -0.5
Lmx1bO88609 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC11.95□□□□□ -0.5
Lmx1bO88609 Gm10478-201ENSMUST00000084451 396 ntBASIC11.95□□□□□ -0.5
Lmx1bO88609 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lmx1bO88609 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Lmx1bO88609 Nat8f6-202ENSMUST00000174143 1571 ntAPPRIS P1 TSL 3 BASIC11.95□□□□□ -0.5
Lmx1bO88609 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lmx1bO88609 Cad-206ENSMUST00000201838 3153 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Lmx1bO88609 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lmx1bO88609 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lmx1bO88609 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lmx1bO88609 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Lmx1bO88609 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Lmx1bO88609 Arhgap27os3-201ENSMUST00000124462 2729 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Lmx1bO88609 Gm7553-201ENSMUST00000185805 1426 ntBASIC11.94□□□□□ -0.5
Lmx1bO88609 Gm45338-207ENSMUST00000211499 1405 ntTSL 5 BASIC11.94□□□□□ -0.5
Lmx1bO88609 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lmx1bO88609 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lmx1bO88609 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lmx1bO88609 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lmx1bO88609 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Lmx1bO88609 Gm10729-202ENSMUST00000193403 1375 ntBASIC11.94□□□□□ -0.5
Lmx1bO88609 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lmx1bO88609 Nfic-202ENSMUST00000078185 3163 ntTSL 5 BASIC11.94□□□□□ -0.5
Lmx1bO88609 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lmx1bO88609 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lmx1bO88609 Gm23931-201ENSMUST00000103842 109 ntBASIC11.94□□□□□ -0.5
Lmx1bO88609 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lmx1bO88609 Litaf-202ENSMUST00000117360 763 ntAPPRIS P1 TSL 3 BASIC11.94□□□□□ -0.5
Lmx1bO88609 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC11.94□□□□□ -0.5
Lmx1bO88609 Drap1-209ENSMUST00000136579 734 ntTSL 2 BASIC11.94□□□□□ -0.5
Lmx1bO88609 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC11.94□□□□□ -0.5
Lmx1bO88609 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Lmx1bO88609 Gm2639-201ENSMUST00000156881 1297 ntBASIC11.94□□□□□ -0.5
Lmx1bO88609 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC11.94□□□□□ -0.5
Lmx1bO88609 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lmx1bO88609 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC11.94□□□□□ -0.5
Lmx1bO88609 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Lmx1bO88609 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC11.94□□□□□ -0.5
Lmx1bO88609 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC11.94□□□□□ -0.5
Lmx1bO88609 Reep1-202ENSMUST00000212631 953 ntTSL 5 BASIC11.94□□□□□ -0.5
Lmx1bO88609 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Lmx1bO88609 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lmx1bO88609 Leap2-201ENSMUST00000036045 531 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lmx1bO88609 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lmx1bO88609 Dhx30-201ENSMUST00000062368 3806 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Lmx1bO88609 Gm9955-201ENSMUST00000067987 309 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
Lmx1bO88609 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
Lmx1bO88609 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lmx1bO88609 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Lmx1bO88609 Trim2-203ENSMUST00000107691 7428 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lmx1bO88609 Gm43796-201ENSMUST00000202853 2012 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
Lmx1bO88609 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lmx1bO88609 Ankrd42-202ENSMUST00000118157 2782 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lmx1bO88609 AC153366.2-201ENSMUST00000219461 1984 ntBASIC11.94□□□□□ -0.5
Lmx1bO88609 Ssc5d-201ENSMUST00000057612 4348 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lmx1bO88609 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
Lmx1bO88609 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lmx1bO88609 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lmx1bO88609 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lmx1bO88609 Psd2-206ENSMUST00000177432 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lmx1bO88609 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC11.93□□□□□ -0.5
Lmx1bO88609 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Lmx1bO88609 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Lmx1bO88609 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC11.93□□□□□ -0.5
Lmx1bO88609 Olfr607-202ENSMUST00000214347 5706 ntAPPRIS P5 TSL 5 BASIC11.93□□□□□ -0.5
Lmx1bO88609 Hyal1-204ENSMUST00000144392 1332 ntTSL 5 BASIC11.93□□□□□ -0.5
Lmx1bO88609 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lmx1bO88609 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC11.93□□□□□ -0.5
Lmx1bO88609 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 49.5 ms