Protein–RNA interactions for Protein: O88544

Cops4, COP9 signalosome complex subunit 4, mousemouse

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cops4O88544 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cops4O88544 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cops4O88544 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC12.17□□□□□ -0.46
Cops4O88544 Wdr25-202ENSMUST00000167816 2657 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Cops4O88544 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cops4O88544 Hdac5-201ENSMUST00000008999 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cops4O88544 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cops4O88544 Pfn4-204ENSMUST00000219503 4775 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Cops4O88544 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC12.17□□□□□ -0.46
Cops4O88544 Myo6-204ENSMUST00000113268 7927 ntTSL 5 BASIC12.17□□□□□ -0.46
Cops4O88544 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cops4O88544 Nelfcd-202ENSMUST00000109075 2279 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cops4O88544 Brdt-201ENSMUST00000031215 4745 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cops4O88544 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cops4O88544 Wdr81-204ENSMUST00000173320 6908 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Cops4O88544 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cops4O88544 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cops4O88544 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cops4O88544 Shtn1-202ENSMUST00000163821 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Cops4O88544 4921507P07Rik-201ENSMUST00000031852 2378 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cops4O88544 Dennd4b-201ENSMUST00000098914 5423 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cops4O88544 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cops4O88544 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cops4O88544 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cops4O88544 Glp2r-202ENSMUST00000051765 4873 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cops4O88544 Rab11fip3-203ENSMUST00000122103 5015 ntAPPRIS P4 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cops4O88544 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cops4O88544 Dag1-204ENSMUST00000191899 5662 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cops4O88544 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cops4O88544 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cops4O88544 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC12.16□□□□□ -0.46
Cops4O88544 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cops4O88544 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Cops4O88544 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC12.16□□□□□ -0.46
Cops4O88544 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC12.16□□□□□ -0.46
Cops4O88544 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC12.16□□□□□ -0.46
Cops4O88544 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Cops4O88544 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC12.16□□□□□ -0.46
Cops4O88544 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Cops4O88544 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Cops4O88544 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC12.16□□□□□ -0.46
Cops4O88544 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC12.16□□□□□ -0.46
Cops4O88544 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Cops4O88544 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Cops4O88544 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cops4O88544 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
Cops4O88544 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
Cops4O88544 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cops4O88544 BC030867-201ENSMUST00000100392 2547 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cops4O88544 Dner-201ENSMUST00000049126 3632 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cops4O88544 Pxn-202ENSMUST00000086523 2667 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
Cops4O88544 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cops4O88544 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC12.16□□□□□ -0.46
Cops4O88544 Msi2-203ENSMUST00000107909 6436 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cops4O88544 Tfe3-203ENSMUST00000101695 2989 ntTSL 5 BASIC12.16□□□□□ -0.46
Cops4O88544 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Cops4O88544 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cops4O88544 Kcnq3-201ENSMUST00000070256 11824 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cops4O88544 Elmsan1-201ENSMUST00000046266 6848 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cops4O88544 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cops4O88544 Enpp5-203ENSMUST00000154166 2490 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cops4O88544 Spata33-208ENSMUST00000212892 2940 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Cops4O88544 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cops4O88544 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Cops4O88544 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cops4O88544 Dhx57-202ENSMUST00000086555 5077 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cops4O88544 Pcdh1-202ENSMUST00000159405 3880 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Cops4O88544 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cops4O88544 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Cops4O88544 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cops4O88544 Dmtn-208ENSMUST00000228009 2643 ntAPPRIS P2 BASIC12.15□□□□□ -0.46
Cops4O88544 Cul9-201ENSMUST00000066026 7818 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Cops4O88544 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cops4O88544 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Cops4O88544 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
Cops4O88544 Acer1-201ENSMUST00000056113 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cops4O88544 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cops4O88544 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cops4O88544 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cops4O88544 Mir1897-201ENSMUST00000122581 272 ntBASIC12.15□□□□□ -0.46
Cops4O88544 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC12.15□□□□□ -0.46
Cops4O88544 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cops4O88544 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Cops4O88544 Gga3-201ENSMUST00000019135 3816 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cops4O88544 Gm33320-201ENSMUST00000192232 530 ntBASIC12.15□□□□□ -0.46
Cops4O88544 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC12.15□□□□□ -0.46
Cops4O88544 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Cops4O88544 AC132467.2-202ENSMUST00000227726 559 ntBASIC12.15□□□□□ -0.46
Cops4O88544 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cops4O88544 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Cops4O88544 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC12.15□□□□□ -0.46
Cops4O88544 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Cops4O88544 Gm3695-201ENSMUST00000087222 1009 ntBASIC12.15□□□□□ -0.46
Cops4O88544 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cops4O88544 Ylpm1-202ENSMUST00000101202 4605 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Cops4O88544 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cops4O88544 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cops4O88544 Sorcs1-206ENSMUST00000209783 3489 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Cops4O88544 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cops4O88544 Xpo1-201ENSMUST00000020538 5145 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 47.6 ms