Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Lima1Q9ERG0 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Lima1Q9ERG0 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Lima1Q9ERG0 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC20.95■□□□□ 0.94
Lima1Q9ERG0 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Lima1Q9ERG0 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Lima1Q9ERG0 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC20.94■□□□□ 0.94
Lima1Q9ERG0 Gm7199-201ENSMUST00000118327 1485 ntBASIC20.94■□□□□ 0.94
Lima1Q9ERG0 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Lima1Q9ERG0 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC20.94■□□□□ 0.94
Lima1Q9ERG0 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Lima1Q9ERG0 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Lima1Q9ERG0 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Lima1Q9ERG0 Gm16437-201ENSMUST00000025669 507 ntBASIC20.94■□□□□ 0.94
Lima1Q9ERG0 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Lima1Q9ERG0 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Lima1Q9ERG0 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
Lima1Q9ERG0 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
Lima1Q9ERG0 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Lima1Q9ERG0 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Lima1Q9ERG0 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Lima1Q9ERG0 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Lima1Q9ERG0 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Lima1Q9ERG0 Gm42418-201ENSMUST00000182010 1831 ntBASIC20.92■□□□□ 0.94
Lima1Q9ERG0 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
Lima1Q9ERG0 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Lima1Q9ERG0 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC20.92■□□□□ 0.94
Lima1Q9ERG0 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Lima1Q9ERG0 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Lima1Q9ERG0 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
Lima1Q9ERG0 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Lima1Q9ERG0 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Lima1Q9ERG0 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Lima1Q9ERG0 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC20.91■□□□□ 0.94
Lima1Q9ERG0 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Lima1Q9ERG0 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC20.91■□□□□ 0.94
Lima1Q9ERG0 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
Lima1Q9ERG0 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Lima1Q9ERG0 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Lima1Q9ERG0 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Lima1Q9ERG0 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Lima1Q9ERG0 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Lima1Q9ERG0 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
Lima1Q9ERG0 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Lima1Q9ERG0 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Lima1Q9ERG0 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Lima1Q9ERG0 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC20.89■□□□□ 0.93
Lima1Q9ERG0 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Lima1Q9ERG0 Gm11687-201ENSMUST00000118911 886 ntBASIC20.88■□□□□ 0.93
Lima1Q9ERG0 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC20.88■□□□□ 0.93
Lima1Q9ERG0 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Lima1Q9ERG0 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
Lima1Q9ERG0 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Lima1Q9ERG0 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
Lima1Q9ERG0 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
Lima1Q9ERG0 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Lima1Q9ERG0 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC20.87■□□□□ 0.93
Lima1Q9ERG0 Gm44428-201ENSMUST00000204474 874 ntBASIC20.87■□□□□ 0.93
Lima1Q9ERG0 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
Lima1Q9ERG0 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Lima1Q9ERG0 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Lima1Q9ERG0 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Lima1Q9ERG0 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Lima1Q9ERG0 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Lima1Q9ERG0 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Lima1Q9ERG0 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Lima1Q9ERG0 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
Lima1Q9ERG0 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC20.86■□□□□ 0.93
Lima1Q9ERG0 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Lima1Q9ERG0 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC20.86■□□□□ 0.93
Lima1Q9ERG0 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Lima1Q9ERG0 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Lima1Q9ERG0 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Lima1Q9ERG0 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC20.85■□□□□ 0.93
Lima1Q9ERG0 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Lima1Q9ERG0 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Lima1Q9ERG0 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Lima1Q9ERG0 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC20.84■□□□□ 0.93
Lima1Q9ERG0 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Lima1Q9ERG0 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC20.84■□□□□ 0.93
Lima1Q9ERG0 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Lima1Q9ERG0 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Lima1Q9ERG0 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
Lima1Q9ERG0 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Lima1Q9ERG0 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Lima1Q9ERG0 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Lima1Q9ERG0 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Lima1Q9ERG0 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC20.83■□□□□ 0.93
Lima1Q9ERG0 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Lima1Q9ERG0 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
Lima1Q9ERG0 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Lima1Q9ERG0 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Lima1Q9ERG0 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Lima1Q9ERG0 Gm11175-201ENSMUST00000116172 543 ntBASIC20.82■□□□□ 0.92
Lima1Q9ERG0 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Lima1Q9ERG0 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Lima1Q9ERG0 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Lima1Q9ERG0 AC117245.4-201ENSMUST00000217388 1646 ntBASIC20.82■□□□□ 0.92
Lima1Q9ERG0 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Lima1Q9ERG0 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 23 ms