Protein–RNA interactions for Protein: Q8CI96

Clip4, CAP-Gly domain-containing linker protein 4, mousemouse

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clip4Q8CI96 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC21.32■■□□□ 1
Clip4Q8CI96 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Clip4Q8CI96 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Clip4Q8CI96 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Clip4Q8CI96 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC21.31■■□□□ 1
Clip4Q8CI96 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC21.31■■□□□ 1
Clip4Q8CI96 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Clip4Q8CI96 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Clip4Q8CI96 AC153962.1-201ENSMUST00000218530 1948 ntBASIC21.31■■□□□ 1
Clip4Q8CI96 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Clip4Q8CI96 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC21.3■■□□□ 1
Clip4Q8CI96 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC21.3■■□□□ 1
Clip4Q8CI96 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Clip4Q8CI96 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Clip4Q8CI96 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC21.3■■□□□ 1
Clip4Q8CI96 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Clip4Q8CI96 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Clip4Q8CI96 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Clip4Q8CI96 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC21.29■■□□□ 1
Clip4Q8CI96 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Clip4Q8CI96 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC21.29■■□□□ 1
Clip4Q8CI96 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
Clip4Q8CI96 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Clip4Q8CI96 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Clip4Q8CI96 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC21.28■■□□□ 1
Clip4Q8CI96 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
Clip4Q8CI96 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC21.27■■□□□ 1
Clip4Q8CI96 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Clip4Q8CI96 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Clip4Q8CI96 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Clip4Q8CI96 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Clip4Q8CI96 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Clip4Q8CI96 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC21.26■□□□□ 0.99
Clip4Q8CI96 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Clip4Q8CI96 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Clip4Q8CI96 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Clip4Q8CI96 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Clip4Q8CI96 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Clip4Q8CI96 AC115037.1-201ENSMUST00000223391 2173 ntBASIC21.26■□□□□ 0.99
Clip4Q8CI96 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Clip4Q8CI96 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Clip4Q8CI96 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Clip4Q8CI96 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Clip4Q8CI96 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Clip4Q8CI96 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Clip4Q8CI96 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Clip4Q8CI96 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Clip4Q8CI96 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Clip4Q8CI96 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Clip4Q8CI96 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Clip4Q8CI96 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC21.24■□□□□ 0.99
Clip4Q8CI96 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Clip4Q8CI96 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC21.24■□□□□ 0.99
Clip4Q8CI96 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
Clip4Q8CI96 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Clip4Q8CI96 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Clip4Q8CI96 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Clip4Q8CI96 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Clip4Q8CI96 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
Clip4Q8CI96 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC21.23■□□□□ 0.99
Clip4Q8CI96 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC21.23■□□□□ 0.99
Clip4Q8CI96 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Clip4Q8CI96 AC153524.1-201ENSMUST00000220436 1935 ntBASIC21.23■□□□□ 0.99
Clip4Q8CI96 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Clip4Q8CI96 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Clip4Q8CI96 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Clip4Q8CI96 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC21.22■□□□□ 0.99
Clip4Q8CI96 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Clip4Q8CI96 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Clip4Q8CI96 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Clip4Q8CI96 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Clip4Q8CI96 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Clip4Q8CI96 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Clip4Q8CI96 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Clip4Q8CI96 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
Clip4Q8CI96 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC21.21■□□□□ 0.99
Clip4Q8CI96 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Clip4Q8CI96 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.99
Clip4Q8CI96 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Clip4Q8CI96 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Clip4Q8CI96 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC21.2■□□□□ 0.98
Clip4Q8CI96 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Clip4Q8CI96 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Clip4Q8CI96 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC21.19■□□□□ 0.98
Clip4Q8CI96 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
Clip4Q8CI96 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Clip4Q8CI96 Gm12504-201ENSMUST00000120860 2231 ntBASIC21.19■□□□□ 0.98
Clip4Q8CI96 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Clip4Q8CI96 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Clip4Q8CI96 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Clip4Q8CI96 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC21.18■□□□□ 0.98
Clip4Q8CI96 Nsd1-203ENSMUST00000224156 1149 ntBASIC21.18■□□□□ 0.98
Clip4Q8CI96 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Clip4Q8CI96 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
Clip4Q8CI96 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Clip4Q8CI96 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Clip4Q8CI96 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC21.17■□□□□ 0.98
Clip4Q8CI96 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC21.17■□□□□ 0.98
Clip4Q8CI96 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Clip4Q8CI96 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC21.17■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 69.7 ms