Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Sox3P53784 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Sox3P53784 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC20.28■□□□□ 0.84
Sox3P53784 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Sox3P53784 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Sox3P53784 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Sox3P53784 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Sox3P53784 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC20.28■□□□□ 0.84
Sox3P53784 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Sox3P53784 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Sox3P53784 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Sox3P53784 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Sox3P53784 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Sox3P53784 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Sox3P53784 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Sox3P53784 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC20.27■□□□□ 0.84
Sox3P53784 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Sox3P53784 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Sox3P53784 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Sox3P53784 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Sox3P53784 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Sox3P53784 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Sox3P53784 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Sox3P53784 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Sox3P53784 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Sox3P53784 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Sox3P53784 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Sox3P53784 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Sox3P53784 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Sox3P53784 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC20.24■□□□□ 0.83
Sox3P53784 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Sox3P53784 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Sox3P53784 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Sox3P53784 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Sox3P53784 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Sox3P53784 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC20.23■□□□□ 0.83
Sox3P53784 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Sox3P53784 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Sox3P53784 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Sox3P53784 Gm6934-201ENSMUST00000194780 1905 ntBASIC20.23■□□□□ 0.83
Sox3P53784 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Sox3P53784 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Sox3P53784 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Sox3P53784 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC20.23■□□□□ 0.83
Sox3P53784 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Sox3P53784 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC20.22■□□□□ 0.83
Sox3P53784 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Sox3P53784 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC20.22■□□□□ 0.83
Sox3P53784 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Sox3P53784 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Sox3P53784 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Sox3P53784 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Sox3P53784 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Sox3P53784 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Sox3P53784 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Sox3P53784 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Sox3P53784 Gm13042-201ENSMUST00000119244 1955 ntBASIC20.21■□□□□ 0.83
Sox3P53784 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Sox3P53784 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Sox3P53784 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Sox3P53784 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC20.2■□□□□ 0.82
Sox3P53784 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Sox3P53784 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC20.2■□□□□ 0.82
Sox3P53784 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Sox3P53784 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Sox3P53784 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Sox3P53784 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC20.2■□□□□ 0.82
Sox3P53784 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Sox3P53784 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC20.19■□□□□ 0.82
Sox3P53784 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Sox3P53784 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Sox3P53784 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Sox3P53784 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Sox3P53784 Gm26766-202ENSMUST00000227544 2347 ntBASIC20.19■□□□□ 0.82
Sox3P53784 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Sox3P53784 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Sox3P53784 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Sox3P53784 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC20.18■□□□□ 0.82
Sox3P53784 Appbp2os-202ENSMUST00000206972 447 ntBASIC20.18■□□□□ 0.82
Sox3P53784 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC20.18■□□□□ 0.82
Sox3P53784 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Sox3P53784 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Sox3P53784 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Sox3P53784 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
Sox3P53784 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Sox3P53784 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC20.17■□□□□ 0.82
Sox3P53784 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC20.17■□□□□ 0.82
Sox3P53784 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Sox3P53784 Gm22238-201ENSMUST00000175222 88 ntBASIC20.17■□□□□ 0.82
Sox3P53784 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Sox3P53784 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Sox3P53784 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC20.16■□□□□ 0.82
Sox3P53784 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Sox3P53784 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Sox3P53784 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Sox3P53784 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Sox3P53784 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Sox3P53784 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Sox3P53784 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Sox3P53784 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC20.15■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 13.2 ms