Protein–RNA interactions for Protein: P33435

Mmp13, Collagenase 3, mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Mmp13P33435 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Mmp13P33435 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
Mmp13P33435 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Mmp13P33435 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Mmp13P33435 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Mmp13P33435 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC21.75■■□□□ 1.07
Mmp13P33435 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Mmp13P33435 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Mmp13P33435 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Mmp13P33435 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Mmp13P33435 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
Mmp13P33435 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
Mmp13P33435 AC117769.4-201ENSMUST00000225679 685 ntBASIC21.73■■□□□ 1.07
Mmp13P33435 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Mmp13P33435 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Mmp13P33435 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Mmp13P33435 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Mmp13P33435 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Mmp13P33435 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC21.72■■□□□ 1.07
Mmp13P33435 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Mmp13P33435 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Mmp13P33435 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Mmp13P33435 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Mmp13P33435 Gm10420-201ENSMUST00000121713 882 ntBASIC21.71■■□□□ 1.07
Mmp13P33435 Gm5067-201ENSMUST00000170449 1009 ntBASIC21.71■■□□□ 1.07
Mmp13P33435 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
Mmp13P33435 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Mmp13P33435 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
Mmp13P33435 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC21.7■■□□□ 1.06
Mmp13P33435 Gm42418-201ENSMUST00000182010 1831 ntBASIC21.7■■□□□ 1.06
Mmp13P33435 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Mmp13P33435 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Mmp13P33435 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Mmp13P33435 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC21.69■■□□□ 1.06
Mmp13P33435 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC21.69■■□□□ 1.06
Mmp13P33435 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
Mmp13P33435 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Mmp13P33435 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Mmp13P33435 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Mmp13P33435 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
Mmp13P33435 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Mmp13P33435 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
Mmp13P33435 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Mmp13P33435 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Mmp13P33435 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Mmp13P33435 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Mmp13P33435 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Mmp13P33435 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC21.67■■□□□ 1.06
Mmp13P33435 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Mmp13P33435 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
Mmp13P33435 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
Mmp13P33435 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Mmp13P33435 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Mmp13P33435 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
Mmp13P33435 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC21.66■■□□□ 1.06
Mmp13P33435 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
Mmp13P33435 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Mmp13P33435 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC21.66■■□□□ 1.06
Mmp13P33435 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Mmp13P33435 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
Mmp13P33435 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Mmp13P33435 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Mmp13P33435 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Mmp13P33435 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC21.65■■□□□ 1.06
Mmp13P33435 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
Mmp13P33435 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Mmp13P33435 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Mmp13P33435 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.06
Mmp13P33435 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.06
Mmp13P33435 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.06
Mmp13P33435 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC21.64■■□□□ 1.06
Mmp13P33435 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Mmp13P33435 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Mmp13P33435 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Mmp13P33435 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC21.63■■□□□ 1.05
Mmp13P33435 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Mmp13P33435 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
Mmp13P33435 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Mmp13P33435 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Mmp13P33435 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC21.63■■□□□ 1.05
Mmp13P33435 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Mmp13P33435 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
Mmp13P33435 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Mmp13P33435 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC21.62■■□□□ 1.05
Mmp13P33435 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC21.62■■□□□ 1.05
Mmp13P33435 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Mmp13P33435 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Mmp13P33435 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
Mmp13P33435 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Mmp13P33435 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Mmp13P33435 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Mmp13P33435 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Mmp13P33435 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Mmp13P33435 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Mmp13P33435 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Mmp13P33435 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC21.61■■□□□ 1.05
Mmp13P33435 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Mmp13P33435 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC21.61■■□□□ 1.05
Mmp13P33435 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Mmp13P33435 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 18 ms