Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
Lmx1bO88609 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Lmx1bO88609 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Lmx1bO88609 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Lmx1bO88609 Gm28536-201ENSMUST00000190971 1317 ntBASIC19.29■□□□□ 0.68
Lmx1bO88609 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Lmx1bO88609 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC19.29■□□□□ 0.68
Lmx1bO88609 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
Lmx1bO88609 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Lmx1bO88609 Etf1-202ENSMUST00000180351 108 ntBASIC19.29■□□□□ 0.68
Lmx1bO88609 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Lmx1bO88609 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Lmx1bO88609 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Lmx1bO88609 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Lmx1bO88609 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Lmx1bO88609 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Lmx1bO88609 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Lmx1bO88609 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Lmx1bO88609 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Lmx1bO88609 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Lmx1bO88609 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
Lmx1bO88609 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Lmx1bO88609 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Lmx1bO88609 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Lmx1bO88609 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Lmx1bO88609 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Lmx1bO88609 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Lmx1bO88609 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Lmx1bO88609 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Lmx1bO88609 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Lmx1bO88609 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Lmx1bO88609 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Lmx1bO88609 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC19.26■□□□□ 0.67
Lmx1bO88609 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Lmx1bO88609 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Lmx1bO88609 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Lmx1bO88609 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Lmx1bO88609 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Lmx1bO88609 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Lmx1bO88609 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Lmx1bO88609 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Lmx1bO88609 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Lmx1bO88609 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC19.25■□□□□ 0.67
Lmx1bO88609 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC19.25■□□□□ 0.67
Lmx1bO88609 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Lmx1bO88609 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
Lmx1bO88609 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Lmx1bO88609 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Lmx1bO88609 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Lmx1bO88609 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Lmx1bO88609 Nsd1-206ENSMUST00000224918 1001 ntBASIC19.24■□□□□ 0.67
Lmx1bO88609 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Lmx1bO88609 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Lmx1bO88609 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Lmx1bO88609 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC19.24■□□□□ 0.67
Lmx1bO88609 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Lmx1bO88609 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC19.23■□□□□ 0.67
Lmx1bO88609 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Lmx1bO88609 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Lmx1bO88609 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Lmx1bO88609 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC19.22■□□□□ 0.67
Lmx1bO88609 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC19.22■□□□□ 0.67
Lmx1bO88609 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Lmx1bO88609 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Lmx1bO88609 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Lmx1bO88609 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC19.21■□□□□ 0.67
Lmx1bO88609 Gm5131-201ENSMUST00000212776 1238 ntBASIC19.21■□□□□ 0.67
Lmx1bO88609 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC19.21■□□□□ 0.67
Lmx1bO88609 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Lmx1bO88609 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Lmx1bO88609 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Lmx1bO88609 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC19.2■□□□□ 0.66
Lmx1bO88609 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC19.2■□□□□ 0.66
Lmx1bO88609 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Lmx1bO88609 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lmx1bO88609 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lmx1bO88609 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Lmx1bO88609 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lmx1bO88609 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lmx1bO88609 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lmx1bO88609 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Lmx1bO88609 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Lmx1bO88609 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Lmx1bO88609 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Lmx1bO88609 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC19.18■□□□□ 0.66
Lmx1bO88609 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC19.18■□□□□ 0.66
Lmx1bO88609 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
Lmx1bO88609 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Lmx1bO88609 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Lmx1bO88609 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC19.17■□□□□ 0.66
Lmx1bO88609 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Lmx1bO88609 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC19.17■□□□□ 0.66
Lmx1bO88609 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC19.17■□□□□ 0.66
Lmx1bO88609 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Lmx1bO88609 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Lmx1bO88609 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Lmx1bO88609 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Lmx1bO88609 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Lmx1bO88609 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Lmx1bO88609 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms