Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Chd3B1AR17 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
Chd3B1AR17 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Chd3B1AR17 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Chd3B1AR17 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC21.09■□□□□ 0.97
Chd3B1AR17 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Chd3B1AR17 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
Chd3B1AR17 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Chd3B1AR17 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
Chd3B1AR17 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC21.08■□□□□ 0.97
Chd3B1AR17 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC21.08■□□□□ 0.96
Chd3B1AR17 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Chd3B1AR17 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Chd3B1AR17 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Chd3B1AR17 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Chd3B1AR17 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Chd3B1AR17 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC21.06■□□□□ 0.96
Chd3B1AR17 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Chd3B1AR17 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Chd3B1AR17 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
Chd3B1AR17 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC21.06■□□□□ 0.96
Chd3B1AR17 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Chd3B1AR17 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Chd3B1AR17 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC21.05■□□□□ 0.96
Chd3B1AR17 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Chd3B1AR17 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Chd3B1AR17 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
Chd3B1AR17 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Chd3B1AR17 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Chd3B1AR17 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
Chd3B1AR17 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Chd3B1AR17 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
Chd3B1AR17 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Chd3B1AR17 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Chd3B1AR17 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Chd3B1AR17 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Chd3B1AR17 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Chd3B1AR17 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Chd3B1AR17 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Chd3B1AR17 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Chd3B1AR17 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Chd3B1AR17 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC21.02■□□□□ 0.96
Chd3B1AR17 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
Chd3B1AR17 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
Chd3B1AR17 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC21.02■□□□□ 0.96
Chd3B1AR17 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC21.02■□□□□ 0.96
Chd3B1AR17 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Chd3B1AR17 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
Chd3B1AR17 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Chd3B1AR17 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC21.01■□□□□ 0.95
Chd3B1AR17 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Chd3B1AR17 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Chd3B1AR17 AC158990.1-201ENSMUST00000221450 2016 ntBASIC21.01■□□□□ 0.95
Chd3B1AR17 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Chd3B1AR17 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Chd3B1AR17 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Chd3B1AR17 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
Chd3B1AR17 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Chd3B1AR17 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC21■□□□□ 0.95
Chd3B1AR17 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Chd3B1AR17 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Chd3B1AR17 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC20.99■□□□□ 0.95
Chd3B1AR17 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Chd3B1AR17 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
Chd3B1AR17 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Chd3B1AR17 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC20.99■□□□□ 0.95
Chd3B1AR17 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Chd3B1AR17 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Chd3B1AR17 Gm7417-201ENSMUST00000192950 473 ntBASIC20.98■□□□□ 0.95
Chd3B1AR17 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
Chd3B1AR17 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
Chd3B1AR17 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
Chd3B1AR17 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC20.98■□□□□ 0.95
Chd3B1AR17 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Chd3B1AR17 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC20.98■□□□□ 0.95
Chd3B1AR17 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Chd3B1AR17 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Chd3B1AR17 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Chd3B1AR17 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Chd3B1AR17 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC20.97■□□□□ 0.95
Chd3B1AR17 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC20.97■□□□□ 0.95
Chd3B1AR17 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC20.97■□□□□ 0.95
Chd3B1AR17 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC20.97■□□□□ 0.95
Chd3B1AR17 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC20.97■□□□□ 0.95
Chd3B1AR17 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Chd3B1AR17 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Chd3B1AR17 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Chd3B1AR17 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC20.96■□□□□ 0.95
Chd3B1AR17 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC20.96■□□□□ 0.95
Chd3B1AR17 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Chd3B1AR17 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Chd3B1AR17 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Chd3B1AR17 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Chd3B1AR17 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC20.95■□□□□ 0.94
Chd3B1AR17 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Chd3B1AR17 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
Chd3B1AR17 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Chd3B1AR17 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC20.95■□□□□ 0.94
Chd3B1AR17 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
Chd3B1AR17 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 18.3 ms