Protein–RNA interactions for Protein: A0A0G2JEM0

Trav3n-3, T cell receptor alpha variable 3D-3 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav3n-3A0A0G2JEM0 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Gm5112-201ENSMUST00000204407 2368 ntBASIC15.98■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trav3n-3A0A0G2JEM0 AC131739.1-201ENSMUST00000221692 1245 ntBASIC15.97■□□□□ 0.15
Trav3n-3A0A0G2JEM0 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC15.97■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trav3n-3A0A0G2JEM0 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Gm9939-201ENSMUST00000067161 1154 ntBASIC15.96■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Trav3n-3A0A0G2JEM0 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC15.95■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC15.95■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC15.95■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC15.94■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Gm6821-201ENSMUST00000107540 542 ntBASIC15.93■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC15.93■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC15.93■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC15.92■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC15.91■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC15.91■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Trav3n-3A0A0G2JEM0 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC15.9■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC15.9■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Trav3n-3A0A0G2JEM0 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Trav3n-3A0A0G2JEM0 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Trav3n-3A0A0G2JEM0 Gm13889-201ENSMUST00000099689 1386 ntBASIC15.89■□□□□ 0.13
Trav3n-3A0A0G2JEM0 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Trav3n-3A0A0G2JEM0 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC15.89■□□□□ 0.13
Trav3n-3A0A0G2JEM0 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Trav3n-3A0A0G2JEM0 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Trav3n-3A0A0G2JEM0 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Trav3n-3A0A0G2JEM0 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Trav3n-3A0A0G2JEM0 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Retrieved 100 of 76,532 protein–RNA pairs in 180.5 ms