Protein–RNA interactions for Protein: Q811S7

Ubp1, Upstream-binding protein 1, mousemouse

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubp1Q811S7 Rbms1-201ENSMUST00000028347 4436 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Ubp1Q811S7 Aco1-201ENSMUST00000102973 3832 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Ubp1Q811S7 Cdyl-202ENSMUST00000163595 3575 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Ubp1Q811S7 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Ubp1Q811S7 Mrpl44-201ENSMUST00000027464 1424 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Ubp1Q811S7 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Ubp1Q811S7 Rcan2-202ENSMUST00000044895 3363 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Ubp1Q811S7 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Ubp1Q811S7 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC13.04□□□□□ -0.32
Ubp1Q811S7 Pla2g4c-204ENSMUST00000167232 2154 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Ubp1Q811S7 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC13.04□□□□□ -0.32
Ubp1Q811S7 Mllt6-202ENSMUST00000107586 7206 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Ubp1Q811S7 Nrd1-201ENSMUST00000065977 4311 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Ubp1Q811S7 Dis3l-203ENSMUST00000120760 3661 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Ubp1Q811S7 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Ubp1Q811S7 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Ubp1Q811S7 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Ubp1Q811S7 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Ubp1Q811S7 Tmem80-205ENSMUST00000132061 667 ntAPPRIS P1 TSL 3 BASIC13.04□□□□□ -0.32
Ubp1Q811S7 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Ubp1Q811S7 Rpl13a-201ENSMUST00000150350 1047 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Ubp1Q811S7 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Ubp1Q811S7 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC13.04□□□□□ -0.32
Ubp1Q811S7 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Ubp1Q811S7 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Ubp1Q811S7 Atp5d-201ENSMUST00000003156 931 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Ubp1Q811S7 Fam173a-201ENSMUST00000072735 800 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Ubp1Q811S7 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Ubp1Q811S7 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Ubp1Q811S7 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Ubp1Q811S7 Trim26-210ENSMUST00000179968 3203 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Ubp1Q811S7 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC13.04□□□□□ -0.32
Ubp1Q811S7 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC13.04□□□□□ -0.32
Ubp1Q811S7 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Ubp1Q811S7 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Ubp1Q811S7 Col20a1-205ENSMUST00000228434 5012 ntAPPRIS P2 BASIC13.04□□□□□ -0.32
Ubp1Q811S7 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC13.04□□□□□ -0.32
Ubp1Q811S7 Gypa-201ENSMUST00000063359 1848 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Ubp1Q811S7 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC13.04□□□□□ -0.32
Ubp1Q811S7 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Ubp1Q811S7 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Ubp1Q811S7 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Ubp1Q811S7 Zfhx2os-202ENSMUST00000183750 4375 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Ubp1Q811S7 Gm43134-201ENSMUST00000199434 1886 ntBASIC13.04□□□□□ -0.32
Ubp1Q811S7 Camk4-201ENSMUST00000042868 12331 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Ubp1Q811S7 Tbr1-201ENSMUST00000048934 3977 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Ubp1Q811S7 Pcdh19-202ENSMUST00000149154 10289 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Ubp1Q811S7 Ankra2-208ENSMUST00000226100 1476 ntBASIC13.04□□□□□ -0.32
Ubp1Q811S7 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ubp1Q811S7 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Ubp1Q811S7 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ubp1Q811S7 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ubp1Q811S7 Plekhg2-202ENSMUST00000119990 4880 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ubp1Q811S7 Retsat-205ENSMUST00000176364 1647 ntTSL 5 BASIC13.03□□□□□ -0.32
Ubp1Q811S7 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ubp1Q811S7 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ubp1Q811S7 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Ubp1Q811S7 Vwa8-201ENSMUST00000040990 7054 ntAPPRIS P2 TSL 5 BASIC13.03□□□□□ -0.32
Ubp1Q811S7 Cdc14a-202ENSMUST00000106491 4292 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Ubp1Q811S7 Rpsa-ps9-201ENSMUST00000120702 885 ntBASIC13.03□□□□□ -0.32
Ubp1Q811S7 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC13.03□□□□□ -0.32
Ubp1Q811S7 Gm6152-201ENSMUST00000151704 340 ntBASIC13.03□□□□□ -0.32
Ubp1Q811S7 Gm9002-201ENSMUST00000178437 499 ntBASIC13.03□□□□□ -0.32
Ubp1Q811S7 Gm6244-201ENSMUST00000178732 841 ntBASIC13.03□□□□□ -0.32
Ubp1Q811S7 Gm27892-201ENSMUST00000185017 106 ntBASIC13.03□□□□□ -0.32
Ubp1Q811S7 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC13.03□□□□□ -0.32
Ubp1Q811S7 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC13.03□□□□□ -0.32
Ubp1Q811S7 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Ubp1Q811S7 Leap2-201ENSMUST00000036045 531 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ubp1Q811S7 Atpif1-201ENSMUST00000067496 539 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ubp1Q811S7 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Ubp1Q811S7 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Ubp1Q811S7 Pde9a-203ENSMUST00000127929 1891 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ubp1Q811S7 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ubp1Q811S7 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ubp1Q811S7 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ubp1Q811S7 Twf1-201ENSMUST00000023087 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ubp1Q811S7 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ubp1Q811S7 D030068K23Rik-201ENSMUST00000180382 2617 ntTSL 2 BASIC13.03□□□□□ -0.32
Ubp1Q811S7 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ubp1Q811S7 Zfp142-203ENSMUST00000113737 7473 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ubp1Q811S7 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC13.03□□□□□ -0.32
Ubp1Q811S7 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Ubp1Q811S7 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Ubp1Q811S7 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Ubp1Q811S7 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC13.03□□□□□ -0.32
Ubp1Q811S7 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC13.02□□□□□ -0.32
Ubp1Q811S7 Angel2-203ENSMUST00000110899 3673 ntTSL 5 BASIC13.02□□□□□ -0.32
Ubp1Q811S7 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Ubp1Q811S7 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Ubp1Q811S7 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Ubp1Q811S7 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Ubp1Q811S7 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Ubp1Q811S7 Ncor2-204ENSMUST00000111394 7452 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Ubp1Q811S7 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC13.02□□□□□ -0.33
Ubp1Q811S7 Gm16175-201ENSMUST00000128181 248 ntTSL 3 BASIC13.02□□□□□ -0.33
Ubp1Q811S7 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC13.02□□□□□ -0.33
Ubp1Q811S7 Gm16275-201ENSMUST00000147774 712 ntTSL 3 BASIC13.02□□□□□ -0.33
Ubp1Q811S7 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Ubp1Q811S7 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC13.02□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 71 ms