Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Limch1Q3UH68 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Limch1Q3UH68 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Neu2-204ENSMUST00000165109 1824 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Jph2-201ENSMUST00000017961 4211 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Necab1-201ENSMUST00000041606 4922 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Wdr25-206ENSMUST00000221510 1600 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Enpp5-203ENSMUST00000154166 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Nmral1-204ENSMUST00000120056 2440 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Prss36-201ENSMUST00000094026 3061 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Gm11814-201ENSMUST00000119515 929 ntBASIC15.54■□□□□ 0.08
Limch1Q3UH68 Gm10863-205ENSMUST00000148028 905 ntTSL 3 BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Gm38319-201ENSMUST00000194537 1266 ntBASIC15.54■□□□□ 0.08
Limch1Q3UH68 Gm7287-201ENSMUST00000205267 602 ntBASIC15.54■□□□□ 0.08
Limch1Q3UH68 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Dkkl1-204ENSMUST00000210741 662 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Sdf4-202ENSMUST00000097734 973 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Slc4a1ap-209ENSMUST00000202214 2806 ntAPPRIS P3 TSL 5 BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Zfp202-201ENSMUST00000026693 3461 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Etv6-202ENSMUST00000111963 5707 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Hps3-202ENSMUST00000108321 3385 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Pdgfra-205ENSMUST00000201711 4088 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Supt6-201ENSMUST00000002121 6488 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Edrf1-202ENSMUST00000128901 4380 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Rgs16-201ENSMUST00000027748 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Ugt1a6a-201ENSMUST00000014263 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC15.54■□□□□ 0.08
Limch1Q3UH68 Tmem169-201ENSMUST00000027380 2928 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Limch1Q3UH68 4933417O13Rik-202ENSMUST00000208893 1571 ntTSL 5 BASIC15.53■□□□□ 0.08
Limch1Q3UH68 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Limch1Q3UH68 C130050O18Rik-201ENSMUST00000052176 1532 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Limch1Q3UH68 Btrc-202ENSMUST00000111936 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Limch1Q3UH68 Scara5-201ENSMUST00000022610 3794 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Limch1Q3UH68 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Limch1Q3UH68 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Limch1Q3UH68 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Limch1Q3UH68 Pgghg-201ENSMUST00000079403 2981 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Limch1Q3UH68 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Limch1Q3UH68 AL645783.1-201ENSMUST00000221416 1832 ntBASIC15.53■□□□□ 0.08
Limch1Q3UH68 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Limch1Q3UH68 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Limch1Q3UH68 Gm12928-201ENSMUST00000117115 573 ntBASIC15.53■□□□□ 0.08
Limch1Q3UH68 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC15.53■□□□□ 0.08
Limch1Q3UH68 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Limch1Q3UH68 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC15.53■□□□□ 0.08
Limch1Q3UH68 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Limch1Q3UH68 Gm38230-201ENSMUST00000193572 1159 ntBASIC15.53■□□□□ 0.08
Limch1Q3UH68 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC15.53■□□□□ 0.08
Limch1Q3UH68 Cfc1-201ENSMUST00000027298 1040 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Limch1Q3UH68 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Limch1Q3UH68 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Limch1Q3UH68 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Limch1Q3UH68 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Limch1Q3UH68 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Limch1Q3UH68 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Limch1Q3UH68 Adat3-201ENSMUST00000178231 4516 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
Limch1Q3UH68 Nrf1-210ENSMUST00000115211 3295 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Limch1Q3UH68 Mfsd14b-201ENSMUST00000054730 3251 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
Limch1Q3UH68 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Limch1Q3UH68 Gm45332-201ENSMUST00000210508 1949 ntTSL 5 BASIC15.53■□□□□ 0.08
Limch1Q3UH68 Adcyap1r1-202ENSMUST00000070756 6107 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Limch1Q3UH68 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Limch1Q3UH68 Gm10176-201ENSMUST00000159707 2264 ntBASIC15.52■□□□□ 0.08
Limch1Q3UH68 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Limch1Q3UH68 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC15.52■□□□□ 0.08
Limch1Q3UH68 BC048403-202ENSMUST00000136432 2968 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Limch1Q3UH68 Olfr71-202ENSMUST00000107862 2587 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.08
Limch1Q3UH68 Olfr1234-202ENSMUST00000111543 1386 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
Limch1Q3UH68 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC15.52■□□□□ 0.08
Limch1Q3UH68 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Limch1Q3UH68 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC15.52■□□□□ 0.08
Limch1Q3UH68 Evi5l-203ENSMUST00000176149 3938 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
Limch1Q3UH68 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
Limch1Q3UH68 Ano6-208ENSMUST00000227791 3149 ntAPPRIS ALT2 BASIC15.52■□□□□ 0.08
Limch1Q3UH68 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Limch1Q3UH68 Gm11684-201ENSMUST00000144975 757 ntTSL 5 BASIC15.52■□□□□ 0.08
Limch1Q3UH68 Plekhd1os-201ENSMUST00000153297 944 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Limch1Q3UH68 Gm45784-201ENSMUST00000188360 142 ntBASIC15.52■□□□□ 0.08
Limch1Q3UH68 Gm9803-202ENSMUST00000216543 456 ntTSL 5 BASIC15.52■□□□□ 0.08
Limch1Q3UH68 Mcrip1-201ENSMUST00000034913 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Limch1Q3UH68 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC15.52■□□□□ 0.07
Limch1Q3UH68 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 41.4 ms