Protein–RNA interactions for Protein: Q38HM4

Trim63, E3 ubiquitin-protein ligase TRIM63, mousemouse

Predictions only

Length 350 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim63Q38HM4 Gm5035-201ENSMUST00000215581 927 ntBASIC10.82□□□□□ -0.68
Trim63Q38HM4 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trim63Q38HM4 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trim63Q38HM4 Gm5124-201ENSMUST00000127554 1970 ntTSL 5 BASIC10.82□□□□□ -0.68
Trim63Q38HM4 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Trim63Q38HM4 Notch2-201ENSMUST00000079812 10500 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trim63Q38HM4 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC10.82□□□□□ -0.68
Trim63Q38HM4 Cog6-201ENSMUST00000036665 3182 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trim63Q38HM4 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trim63Q38HM4 Tsen2-201ENSMUST00000040234 2106 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trim63Q38HM4 Zfp217-201ENSMUST00000063710 5685 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trim63Q38HM4 Abat-201ENSMUST00000065987 4636 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trim63Q38HM4 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trim63Q38HM4 Gm13264-201ENSMUST00000138416 2011 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Trim63Q38HM4 Cbfa2t3-203ENSMUST00000127984 7645 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trim63Q38HM4 1700019D03Rik-202ENSMUST00000114492 3565 ntAPPRIS P1 TSL 3 BASIC10.82□□□□□ -0.68
Trim63Q38HM4 Zfp957-201ENSMUST00000040802 2613 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trim63Q38HM4 E130308A19Rik-201ENSMUST00000052420 3205 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Trim63Q38HM4 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trim63Q38HM4 Gm10851-201ENSMUST00000192087 1685 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Trim63Q38HM4 Apol7a-203ENSMUST00000175919 2263 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trim63Q38HM4 Kalrn-206ENSMUST00000114954 4677 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Trim63Q38HM4 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC10.82□□□□□ -0.68
Trim63Q38HM4 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trim63Q38HM4 Gpatch2l-204ENSMUST00000221368 4355 ntAPPRIS P2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trim63Q38HM4 Irak2-201ENSMUST00000059286 3196 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trim63Q38HM4 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Trim63Q38HM4 Gm38055-201ENSMUST00000195353 2217 ntBASIC10.81□□□□□ -0.68
Trim63Q38HM4 Gm20649-201ENSMUST00000160950 2740 ntTSL 2 BASIC10.81□□□□□ -0.68
Trim63Q38HM4 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
Trim63Q38HM4 Gm42943-201ENSMUST00000199676 3242 ntBASIC10.81□□□□□ -0.68
Trim63Q38HM4 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trim63Q38HM4 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
Trim63Q38HM4 Madd-202ENSMUST00000066473 5974 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
Trim63Q38HM4 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trim63Q38HM4 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC10.81□□□□□ -0.68
Trim63Q38HM4 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trim63Q38HM4 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Trim63Q38HM4 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC10.81□□□□□ -0.68
Trim63Q38HM4 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC10.81□□□□□ -0.68
Trim63Q38HM4 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC10.81□□□□□ -0.68
Trim63Q38HM4 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC10.81□□□□□ -0.68
Trim63Q38HM4 AC159205.6-201ENSMUST00000224935 887 ntBASIC10.81□□□□□ -0.68
Trim63Q38HM4 Eif4enif1-204ENSMUST00000120721 2952 ntTSL 5 BASIC10.81□□□□□ -0.68
Trim63Q38HM4 6030407O03Rik-201ENSMUST00000189514 2094 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Trim63Q38HM4 Klhl3-201ENSMUST00000091583 6871 ntTSL 5 BASIC10.81□□□□□ -0.68
Trim63Q38HM4 Pla2g15-201ENSMUST00000034377 2706 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trim63Q38HM4 Sema3f-201ENSMUST00000080560 3395 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trim63Q38HM4 Zfp28-201ENSMUST00000081022 4447 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trim63Q38HM4 Fosb-201ENSMUST00000003640 3782 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trim63Q38HM4 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Trim63Q38HM4 Cacna1e-207ENSMUST00000211821 6765 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
Trim63Q38HM4 Herc4-208ENSMUST00000219577 3914 ntAPPRIS ALT1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trim63Q38HM4 Oraov1-204ENSMUST00000128057 2231 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trim63Q38HM4 Tfdp2-204ENSMUST00000179065 2213 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Trim63Q38HM4 Dnajc5-203ENSMUST00000108797 3664 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trim63Q38HM4 Gm26688-201ENSMUST00000181176 1568 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Trim63Q38HM4 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trim63Q38HM4 Gm44401-201ENSMUST00000204462 2375 ntBASIC10.81□□□□□ -0.68
Trim63Q38HM4 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Trim63Q38HM4 Gpcpd1-205ENSMUST00000110142 3703 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
Trim63Q38HM4 Asb7-202ENSMUST00000124899 4928 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trim63Q38HM4 Myo9a-205ENSMUST00000135298 12198 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
Trim63Q38HM4 Serpina1f-202ENSMUST00000117053 2830 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Trim63Q38HM4 Kif2c-201ENSMUST00000065896 2842 ntAPPRIS P3 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trim63Q38HM4 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trim63Q38HM4 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trim63Q38HM4 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trim63Q38HM4 Slc17a5-202ENSMUST00000117645 3114 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Trim63Q38HM4 Mamld1-201ENSMUST00000082088 4796 ntAPPRIS P4 TSL 5 BASIC10.8□□□□□ -0.68
Trim63Q38HM4 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC10.8□□□□□ -0.68
Trim63Q38HM4 Gm26778-201ENSMUST00000181443 3805 ntTSL 5 BASIC10.8□□□□□ -0.68
Trim63Q38HM4 Ngfr-201ENSMUST00000000122 3446 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trim63Q38HM4 Gm17244-201ENSMUST00000192482 3416 ntBASIC10.8□□□□□ -0.68
Trim63Q38HM4 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trim63Q38HM4 Gm15459-201ENSMUST00000117405 1941 ntBASIC10.8□□□□□ -0.68
Trim63Q38HM4 Gm8355-201ENSMUST00000177767 1941 ntBASIC10.8□□□□□ -0.68
Trim63Q38HM4 Zfp512-208ENSMUST00000202244 3045 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Trim63Q38HM4 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC10.8□□□□□ -0.68
Trim63Q38HM4 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trim63Q38HM4 Atp6v0a1-201ENSMUST00000044721 4008 ntAPPRIS P2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trim63Q38HM4 Ppil2-212ENSMUST00000164458 2230 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trim63Q38HM4 Arhgef2-206ENSMUST00000175779 3065 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
Trim63Q38HM4 Lmnb2-204ENSMUST00000179022 3370 ntAPPRIS P2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trim63Q38HM4 9030624J02Rik-202ENSMUST00000059390 5097 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Trim63Q38HM4 Thbs2-201ENSMUST00000170872 5922 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trim63Q38HM4 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trim63Q38HM4 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Trim63Q38HM4 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Trim63Q38HM4 Gm30025-201ENSMUST00000218555 728 ntBASIC10.8□□□□□ -0.68
Trim63Q38HM4 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC10.8□□□□□ -0.68
Trim63Q38HM4 AC132467.2-202ENSMUST00000227726 559 ntBASIC10.8□□□□□ -0.68
Trim63Q38HM4 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trim63Q38HM4 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trim63Q38HM4 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trim63Q38HM4 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trim63Q38HM4 Gm5417-201ENSMUST00000079706 384 ntBASIC10.8□□□□□ -0.68
Trim63Q38HM4 Nek1-208ENSMUST00000211256 4810 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trim63Q38HM4 Ptprg-201ENSMUST00000022264 9213 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trim63Q38HM4 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Retrieved 100 of 76,532 protein–RNA pairs in 47.6 ms