Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sox9Q04887 Papd7-201ENSMUST00000044081 3994 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sox9Q04887 Kifc5c-ps-201ENSMUST00000179040 1530 ntBASIC13.6□□□□□ -0.23
Sox9Q04887 Sipa1-204ENSMUST00000169854 3583 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
Sox9Q04887 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
Sox9Q04887 Gm10961-201ENSMUST00000106703 144 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
Sox9Q04887 Stxbp2-207ENSMUST00000160708 2908 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sox9Q04887 Gm20498-202ENSMUST00000164386 1043 ntTSL 2 BASIC13.6□□□□□ -0.23
Sox9Q04887 Pmvk-203ENSMUST00000184515 1156 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Sox9Q04887 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
Sox9Q04887 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sox9Q04887 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sox9Q04887 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
Sox9Q04887 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC13.6□□□□□ -0.23
Sox9Q04887 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Sox9Q04887 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Sox9Q04887 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sox9Q04887 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sox9Q04887 Gm43908-201ENSMUST00000205074 1472 ntBASIC13.6□□□□□ -0.23
Sox9Q04887 Gm44775-201ENSMUST00000207266 1456 ntBASIC13.6□□□□□ -0.23
Sox9Q04887 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sox9Q04887 Pard6b-201ENSMUST00000052125 3399 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sox9Q04887 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sox9Q04887 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC13.6□□□□□ -0.23
Sox9Q04887 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sox9Q04887 Hist1h2be-202ENSMUST00000091704 2480 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sox9Q04887 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sox9Q04887 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sox9Q04887 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sox9Q04887 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
Sox9Q04887 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sox9Q04887 Gpc5-201ENSMUST00000022707 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sox9Q04887 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Sox9Q04887 Wls-205ENSMUST00000198878 2050 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sox9Q04887 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sox9Q04887 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC13.59□□□□□ -0.23
Sox9Q04887 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sox9Q04887 Mib1-201ENSMUST00000052838 10231 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sox9Q04887 Gm9062-201ENSMUST00000117712 727 ntBASIC13.59□□□□□ -0.23
Sox9Q04887 Gm6335-201ENSMUST00000118081 1194 ntBASIC13.59□□□□□ -0.23
Sox9Q04887 Gm13996-201ENSMUST00000118456 430 ntBASIC13.59□□□□□ -0.23
Sox9Q04887 Gm7816-201ENSMUST00000119884 1194 ntBASIC13.59□□□□□ -0.23
Sox9Q04887 Gm15542-201ENSMUST00000121585 1194 ntBASIC13.59□□□□□ -0.23
Sox9Q04887 1810063I02Rik-201ENSMUST00000130205 274 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Sox9Q04887 Gm23699-201ENSMUST00000158835 135 ntBASIC13.59□□□□□ -0.23
Sox9Q04887 Krtap20-2-201ENSMUST00000169954 528 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
Sox9Q04887 1700031P21Rik-203ENSMUST00000191400 466 ntTSL 3 BASIC13.59□□□□□ -0.23
Sox9Q04887 Gm44551-201ENSMUST00000208804 171 ntBASIC13.59□□□□□ -0.23
Sox9Q04887 Pf4-201ENSMUST00000031320 588 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sox9Q04887 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sox9Q04887 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Sox9Q04887 Kctd14-201ENSMUST00000050732 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sox9Q04887 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sox9Q04887 Golim4-208ENSMUST00000167078 2902 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sox9Q04887 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sox9Q04887 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sox9Q04887 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC13.59□□□□□ -0.23
Sox9Q04887 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sox9Q04887 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sox9Q04887 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sox9Q04887 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Sox9Q04887 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
Sox9Q04887 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Sox9Q04887 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.23
Sox9Q04887 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC13.58□□□□□ -0.23
Sox9Q04887 Dnajb5-204ENSMUST00000107973 2300 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.23
Sox9Q04887 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Sox9Q04887 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Sox9Q04887 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Sox9Q04887 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
Sox9Q04887 Rbpsuh-rs3-201ENSMUST00000182751 1441 ntBASIC13.58□□□□□ -0.24
Sox9Q04887 AC096628.2-201ENSMUST00000225443 1413 ntBASIC13.58□□□□□ -0.24
Sox9Q04887 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
Sox9Q04887 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Sox9Q04887 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
Sox9Q04887 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
Sox9Q04887 Gm11568-201ENSMUST00000107434 1145 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
Sox9Q04887 Gm6370-201ENSMUST00000110611 1142 ntAPPRIS P2 TSL 5 BASIC13.58□□□□□ -0.24
Sox9Q04887 Gm15891-201ENSMUST00000127307 611 ntTSL 5 BASIC13.58□□□□□ -0.24
Sox9Q04887 Gm10714-201ENSMUST00000131346 874 ntTSL 2 BASIC13.58□□□□□ -0.24
Sox9Q04887 Gm6309-201ENSMUST00000174320 1154 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
Sox9Q04887 Gm19459-201ENSMUST00000176240 835 ntBASIC13.58□□□□□ -0.24
Sox9Q04887 Gm6407-201ENSMUST00000176468 549 ntBASIC13.58□□□□□ -0.24
Sox9Q04887 Gm28727-201ENSMUST00000176549 443 ntTSL 3 BASIC13.58□□□□□ -0.24
Sox9Q04887 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC13.58□□□□□ -0.24
Sox9Q04887 Gm29087-201ENSMUST00000186462 645 ntTSL 5 BASIC13.58□□□□□ -0.24
Sox9Q04887 4931419H13Rik-201ENSMUST00000199770 973 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Sox9Q04887 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Sox9Q04887 Gm5904-201ENSMUST00000210286 865 ntBASIC13.58□□□□□ -0.24
Sox9Q04887 Gm32025-201ENSMUST00000217960 307 ntBASIC13.58□□□□□ -0.24
Sox9Q04887 Prss34-201ENSMUST00000037453 1216 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Sox9Q04887 Adm2-201ENSMUST00000066991 1043 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Sox9Q04887 Stt3b-201ENSMUST00000035010 4221 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Sox9Q04887 Nmral1-202ENSMUST00000079130 1459 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Sox9Q04887 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Sox9Q04887 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
Sox9Q04887 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC13.58□□□□□ -0.24
Sox9Q04887 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Sox9Q04887 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC13.58□□□□□ -0.24
Sox9Q04887 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC13.58□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 61.9 ms