Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Cdh11P55288 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Cdh11P55288 Nfib-203ENSMUST00000107245 9116 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Cdh11P55288 D6Ertd527e-203ENSMUST00000203747 2216 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Cdh11P55288 Tlr9-201ENSMUST00000062241 3478 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Cdh11P55288 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Cdh11P55288 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Cdh11P55288 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Cdh11P55288 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Cdh11P55288 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Cdh11P55288 Chst15-201ENSMUST00000077472 5041 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cdh11P55288 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC12.05□□□□□ -0.48
Cdh11P55288 Slc29a2-201ENSMUST00000025826 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cdh11P55288 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Cdh11P55288 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Cdh11P55288 Zfp516-202ENSMUST00000171238 7725 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Cdh11P55288 Zfp516-201ENSMUST00000071233 7703 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Cdh11P55288 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cdh11P55288 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cdh11P55288 Pou2af1-201ENSMUST00000034554 2548 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cdh11P55288 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cdh11P55288 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cdh11P55288 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Cdh11P55288 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC12.05□□□□□ -0.48
Cdh11P55288 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cdh11P55288 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Cdh11P55288 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
Cdh11P55288 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC12.05□□□□□ -0.48
Cdh11P55288 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cdh11P55288 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Cdh11P55288 Pla2g2e-203ENSMUST00000105804 786 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cdh11P55288 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
Cdh11P55288 Gm12490-201ENSMUST00000120255 560 ntBASIC12.05□□□□□ -0.48
Cdh11P55288 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC12.05□□□□□ -0.48
Cdh11P55288 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Cdh11P55288 Gm12091-201ENSMUST00000146791 830 ntBASIC12.05□□□□□ -0.48
Cdh11P55288 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC12.05□□□□□ -0.48
Cdh11P55288 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC12.05□□□□□ -0.48
Cdh11P55288 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC12.05□□□□□ -0.48
Cdh11P55288 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Cdh11P55288 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC12.05□□□□□ -0.48
Cdh11P55288 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC12.05□□□□□ -0.48
Cdh11P55288 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC12.05□□□□□ -0.48
Cdh11P55288 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC12.05□□□□□ -0.48
Cdh11P55288 AC139580.1-202ENSMUST00000223574 928 ntBASIC12.05□□□□□ -0.48
Cdh11P55288 AC154239.3-201ENSMUST00000226933 674 ntBASIC12.05□□□□□ -0.48
Cdh11P55288 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cdh11P55288 Gm5519-201ENSMUST00000042061 513 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cdh11P55288 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Cdh11P55288 Tmem107-202ENSMUST00000094081 1263 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Cdh11P55288 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Cdh11P55288 Gm44241-201ENSMUST00000203230 1662 ntBASIC12.05□□□□□ -0.48
Cdh11P55288 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Cdh11P55288 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cdh11P55288 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Cdh11P55288 AC125108.1-201ENSMUST00000218986 2330 ntBASIC12.05□□□□□ -0.48
Cdh11P55288 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cdh11P55288 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cdh11P55288 Osbpl7-201ENSMUST00000090020 3771 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cdh11P55288 AC116503.1-201ENSMUST00000215445 2192 ntBASIC12.05□□□□□ -0.48
Cdh11P55288 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cdh11P55288 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cdh11P55288 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC12.05□□□□□ -0.48
Cdh11P55288 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cdh11P55288 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Cdh11P55288 Pcnx2-204ENSMUST00000131127 3782 ntTSL 5 BASIC12.04□□□□□ -0.48
Cdh11P55288 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdh11P55288 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdh11P55288 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Cdh11P55288 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdh11P55288 Asph-202ENSMUST00000078139 6694 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdh11P55288 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Cdh11P55288 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Cdh11P55288 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdh11P55288 Ago1-201ENSMUST00000097888 7227 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdh11P55288 Aldh9a1-201ENSMUST00000028004 2835 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdh11P55288 Kcp-203ENSMUST00000101614 4885 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdh11P55288 Agpat5-202ENSMUST00000149565 10779 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdh11P55288 Hlf-201ENSMUST00000004051 5642 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdh11P55288 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Cdh11P55288 Rnd1-202ENSMUST00000109149 1034 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Cdh11P55288 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Cdh11P55288 Gm21470-201ENSMUST00000187680 696 ntBASIC12.04□□□□□ -0.48
Cdh11P55288 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Cdh11P55288 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Cdh11P55288 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC12.04□□□□□ -0.48
Cdh11P55288 AC154806.6-201ENSMUST00000228192 202 ntBASIC12.04□□□□□ -0.48
Cdh11P55288 Gm15823-201ENSMUST00000064305 670 ntBASIC12.04□□□□□ -0.48
Cdh11P55288 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdh11P55288 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC12.04□□□□□ -0.48
Cdh11P55288 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdh11P55288 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdh11P55288 Phldb1-218ENSMUST00000156918 3485 ntTSL 5 BASIC12.04□□□□□ -0.48
Cdh11P55288 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Cdh11P55288 Gm27196-201ENSMUST00000184787 2582 ntBASIC12.04□□□□□ -0.48
Cdh11P55288 Eef1d-206ENSMUST00000109975 2842 ntTSL 5 BASIC12.04□□□□□ -0.48
Cdh11P55288 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Cdh11P55288 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Cdh11P55288 AC159196.2-201ENSMUST00000224082 1622 ntBASIC12.04□□□□□ -0.48
Cdh11P55288 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms