Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col18a1P39061 Gm24891-201ENSMUST00000104391 136 ntBASIC17.04■□□□□ 0.32
Col18a1P39061 Ccl1-202ENSMUST00000108189 514 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col18a1P39061 Dmrtc1a-204ENSMUST00000121197 1067 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col18a1P39061 2610316D01Rik-201ENSMUST00000181047 924 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Col18a1P39061 Ccl1-201ENSMUST00000021043 611 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Col18a1P39061 Gm18636-201ENSMUST00000218846 1066 ntBASIC17.04■□□□□ 0.32
Col18a1P39061 4930569F06Rik-201ENSMUST00000036821 433 ntBASIC17.04■□□□□ 0.32
Col18a1P39061 Lce3d-201ENSMUST00000059053 491 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col18a1P39061 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC17.04■□□□□ 0.32
Col18a1P39061 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col18a1P39061 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col18a1P39061 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col18a1P39061 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Col18a1P39061 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col18a1P39061 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Col18a1P39061 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col18a1P39061 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col18a1P39061 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col18a1P39061 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col18a1P39061 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Col18a1P39061 1300017J02Rik-202ENSMUST00000123530 1874 ntTSL 5 BASIC17.03■□□□□ 0.32
Col18a1P39061 Fnbp1-203ENSMUST00000100207 1680 ntTSL 5 BASIC17.03■□□□□ 0.32
Col18a1P39061 Pstpip2-201ENSMUST00000114741 1395 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col18a1P39061 Rbmx2-ps-201ENSMUST00000119377 930 ntBASIC17.03■□□□□ 0.32
Col18a1P39061 Immp2l-202ENSMUST00000132121 1147 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Col18a1P39061 Gm17099-201ENSMUST00000166780 412 ntTSL 3 BASIC17.03■□□□□ 0.32
Col18a1P39061 Glmp-208ENSMUST00000176519 447 ntTSL 5 BASIC17.03■□□□□ 0.32
Col18a1P39061 Chn2-212ENSMUST00000204115 783 ntTSL 5 BASIC17.03■□□□□ 0.32
Col18a1P39061 1700012D14Rik-204ENSMUST00000210788 547 ntTSL 3 BASIC17.03■□□□□ 0.32
Col18a1P39061 Gm40578-201ENSMUST00000220837 390 ntTSL 2 BASIC17.03■□□□□ 0.32
Col18a1P39061 Ms4a8a-201ENSMUST00000025636 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col18a1P39061 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col18a1P39061 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Col18a1P39061 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col18a1P39061 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Col18a1P39061 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col18a1P39061 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col18a1P39061 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC17.03■□□□□ 0.32
Col18a1P39061 Sirt2-201ENSMUST00000072965 1843 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col18a1P39061 Slc6a21-201ENSMUST00000085364 1732 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Col18a1P39061 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col18a1P39061 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC17.03■□□□□ 0.32
Col18a1P39061 Kansl2-ps-201ENSMUST00000181818 1461 ntBASIC17.03■□□□□ 0.32
Col18a1P39061 Zfp809-201ENSMUST00000072465 1425 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col18a1P39061 Gm14585-201ENSMUST00000120713 634 ntBASIC17.02■□□□□ 0.32
Col18a1P39061 Gm12516-201ENSMUST00000120819 385 ntBASIC17.02■□□□□ 0.32
Col18a1P39061 Bach2os-202ENSMUST00000136149 687 ntTSL 2 BASIC17.02■□□□□ 0.32
Col18a1P39061 Nop16-202ENSMUST00000148222 790 ntTSL 5 BASIC17.02■□□□□ 0.32
Col18a1P39061 Rprl1-201ENSMUST00000158050 327 ntBASIC17.02■□□□□ 0.32
Col18a1P39061 Hspb9-202ENSMUST00000169833 726 ntAPPRIS P2 BASIC17.02■□□□□ 0.32
Col18a1P39061 Anapc16-203ENSMUST00000182152 847 ntTSL 2 BASIC17.02■□□□□ 0.32
Col18a1P39061 Gm6722-201ENSMUST00000221586 390 ntBASIC17.02■□□□□ 0.32
Col18a1P39061 Psmg2-201ENSMUST00000025418 1059 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Col18a1P39061 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Col18a1P39061 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Col18a1P39061 Gm10605-202ENSMUST00000183019 3198 ntBASIC17.02■□□□□ 0.32
Col18a1P39061 Cdc45-202ENSMUST00000096990 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Col18a1P39061 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Col18a1P39061 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Col18a1P39061 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Col18a1P39061 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Col18a1P39061 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Col18a1P39061 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.32
Col18a1P39061 Lin37-202ENSMUST00000108164 1312 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Col18a1P39061 Mmgt2-203ENSMUST00000129162 1828 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
Col18a1P39061 Mir671-201ENSMUST00000102432 98 ntBASIC17.02■□□□□ 0.31
Col18a1P39061 Gm11379-201ENSMUST00000154678 381 ntTSL 3 BASIC17.02■□□□□ 0.31
Col18a1P39061 Gm15523-201ENSMUST00000160463 439 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Col18a1P39061 Pfdn6-202ENSMUST00000173363 871 ntTSL 2 BASIC17.02■□□□□ 0.31
Col18a1P39061 Gm43186-201ENSMUST00000198130 824 ntBASIC17.02■□□□□ 0.31
Col18a1P39061 Gm7902-201ENSMUST00000198842 947 ntBASIC17.02■□□□□ 0.31
Col18a1P39061 6430531B16Rik-204ENSMUST00000209335 898 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Col18a1P39061 2010001M07Rik-201ENSMUST00000214235 364 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Col18a1P39061 AC159376.1-201ENSMUST00000218504 630 ntBASIC17.02■□□□□ 0.31
Col18a1P39061 Them5-201ENSMUST00000029794 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Col18a1P39061 Mrpl41-201ENSMUST00000045604 776 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Col18a1P39061 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Col18a1P39061 BC055324-201ENSMUST00000045876 3179 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Col18a1P39061 Hist2h4-201ENSMUST00000171473 1630 ntAPPRIS P1 BASIC17.02■□□□□ 0.31
Col18a1P39061 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col18a1P39061 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col18a1P39061 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col18a1P39061 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC17.01■□□□□ 0.31
Col18a1P39061 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col18a1P39061 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col18a1P39061 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col18a1P39061 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC17.01■□□□□ 0.31
Col18a1P39061 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col18a1P39061 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col18a1P39061 Ifna2-201ENSMUST00000105147 1032 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Col18a1P39061 2610005L07Rik-201ENSMUST00000139264 948 ntBASIC17.01■□□□□ 0.31
Col18a1P39061 Smyd1-205ENSMUST00000173297 947 ntTSL 5 BASIC17.01■□□□□ 0.31
Col18a1P39061 Gm21092-201ENSMUST00000178995 955 ntBASIC17.01■□□□□ 0.31
Col18a1P39061 Acy1-208ENSMUST00000214275 1284 ntTSL 5 BASIC17.01■□□□□ 0.31
Col18a1P39061 AC155712.2-201ENSMUST00000220398 643 ntTSL 3 BASIC17.01■□□□□ 0.31
Col18a1P39061 Commd4-201ENSMUST00000065358 858 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col18a1P39061 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col18a1P39061 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col18a1P39061 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 64.3 ms