Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 AC127270.1-201ENSMUST00000221441 491 ntTSL 3 BASIC11.73□□□□□ -0.53
Col5a1O88207 AC132901.1-201ENSMUST00000224345 508 ntBASIC11.73□□□□□ -0.53
Col5a1O88207 Spcs1-203ENSMUST00000226374 592 ntBASIC11.73□□□□□ -0.53
Col5a1O88207 Cym-201ENSMUST00000029504 1236 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col5a1O88207 Ppie-201ENSMUST00000030404 1188 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col5a1O88207 Olfr887-201ENSMUST00000074681 930 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
Col5a1O88207 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col5a1O88207 Arfip1-201ENSMUST00000098990 2799 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Col5a1O88207 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC11.73□□□□□ -0.53
Col5a1O88207 Ddhd1-203ENSMUST00000111828 9802 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col5a1O88207 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col5a1O88207 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col5a1O88207 Gm5939-201ENSMUST00000119613 2874 ntBASIC11.73□□□□□ -0.53
Col5a1O88207 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Col5a1O88207 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Col5a1O88207 Mrap2-201ENSMUST00000049457 1931 ntAPPRIS P1 TSL 3 BASIC11.73□□□□□ -0.53
Col5a1O88207 A230072I06Rik-201ENSMUST00000098935 1839 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Col5a1O88207 Btrc-202ENSMUST00000111936 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col5a1O88207 Gm11596-201ENSMUST00000105058 1079 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Col5a1O88207 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col5a1O88207 Gm6335-201ENSMUST00000118081 1194 ntBASIC11.72□□□□□ -0.53
Col5a1O88207 Gm13408-201ENSMUST00000119822 798 ntBASIC11.72□□□□□ -0.53
Col5a1O88207 Gm7816-201ENSMUST00000119884 1194 ntBASIC11.72□□□□□ -0.53
Col5a1O88207 Rpl28-ps1-201ENSMUST00000121497 414 ntBASIC11.72□□□□□ -0.53
Col5a1O88207 Gm15542-201ENSMUST00000121585 1194 ntBASIC11.72□□□□□ -0.53
Col5a1O88207 Gm13935-201ENSMUST00000121859 798 ntBASIC11.72□□□□□ -0.53
Col5a1O88207 1810063I02Rik-201ENSMUST00000130205 274 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Col5a1O88207 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Col5a1O88207 Gm10051-201ENSMUST00000145209 414 ntBASIC11.72□□□□□ -0.53
Col5a1O88207 Gm24749-201ENSMUST00000157838 343 ntBASIC11.72□□□□□ -0.53
Col5a1O88207 Sap25-201ENSMUST00000166099 1101 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col5a1O88207 Krtap20-2-201ENSMUST00000169954 528 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Col5a1O88207 Gm27175-201ENSMUST00000183759 606 ntTSL 3 BASIC11.72□□□□□ -0.53
Col5a1O88207 Dusp13-211ENSMUST00000183943 779 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Col5a1O88207 Gm27223-201ENSMUST00000184653 606 ntTSL 3 BASIC11.72□□□□□ -0.53
Col5a1O88207 Tpd52l1-203ENSMUST00000213639 827 ntAPPRIS ALT2 TSL 2 BASIC11.72□□□□□ -0.53
Col5a1O88207 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC11.72□□□□□ -0.53
Col5a1O88207 Dhrs4-202ENSMUST00000226168 828 ntBASIC11.72□□□□□ -0.53
Col5a1O88207 Plp2-201ENSMUST00000033486 1157 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col5a1O88207 Nrf1-219ENSMUST00000167972 1541 ntTSL 5 BASIC11.72□□□□□ -0.53
Col5a1O88207 Gm44094-201ENSMUST00000204703 2030 ntBASIC11.72□□□□□ -0.53
Col5a1O88207 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col5a1O88207 CT009713.10-201ENSMUST00000225013 1986 ntBASIC11.72□□□□□ -0.53
Col5a1O88207 Gm36266-201ENSMUST00000196660 1749 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Col5a1O88207 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col5a1O88207 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col5a1O88207 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col5a1O88207 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col5a1O88207 Aire-202ENSMUST00000105395 1630 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Col5a1O88207 Cacna1g-201ENSMUST00000021234 8139 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Col5a1O88207 Neu2-204ENSMUST00000165109 1824 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col5a1O88207 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC11.72□□□□□ -0.53
Col5a1O88207 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Col5a1O88207 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col5a1O88207 Gm37795-201ENSMUST00000194216 2459 ntBASIC11.72□□□□□ -0.53
Col5a1O88207 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col5a1O88207 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col5a1O88207 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Col5a1O88207 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col5a1O88207 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col5a1O88207 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
Col5a1O88207 Gm11961-202ENSMUST00000141157 760 ntTSL 3 BASIC11.72□□□□□ -0.53
Col5a1O88207 Hcfc1r1-203ENSMUST00000180140 693 ntAPPRIS P2 TSL 2 BASIC11.72□□□□□ -0.53
Col5a1O88207 Mocs2-215ENSMUST00000184335 646 ntTSL 5 BASIC11.72□□□□□ -0.53
Col5a1O88207 Sox2ot-217ENSMUST00000200414 710 ntTSL 3 BASIC11.72□□□□□ -0.53
Col5a1O88207 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC11.72□□□□□ -0.53
Col5a1O88207 Ccdc153-202ENSMUST00000213891 792 ntAPPRIS ALT2 TSL 3 BASIC11.72□□□□□ -0.53
Col5a1O88207 AC154222.2-201ENSMUST00000225848 607 ntBASIC11.72□□□□□ -0.53
Col5a1O88207 Asb9-201ENSMUST00000033756 1139 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col5a1O88207 Olfr398-201ENSMUST00000053874 945 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Col5a1O88207 1700001J03Rik-201ENSMUST00000073721 787 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col5a1O88207 Fam155a-201ENSMUST00000110969 3388 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col5a1O88207 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col5a1O88207 Gm5989-201ENSMUST00000096092 2077 ntBASIC11.72□□□□□ -0.53
Col5a1O88207 Gm10125-203ENSMUST00000161096 3493 ntTSL 3 BASIC11.71□□□□□ -0.53
Col5a1O88207 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Col5a1O88207 Nmbr-201ENSMUST00000020015 1599 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Col5a1O88207 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Col5a1O88207 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Col5a1O88207 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
Col5a1O88207 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Col5a1O88207 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Col5a1O88207 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Col5a1O88207 Gm1113-201ENSMUST00000183573 2434 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
Col5a1O88207 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC11.71□□□□□ -0.53
Col5a1O88207 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Col5a1O88207 Tmem159-201ENSMUST00000033210 1484 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Col5a1O88207 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Col5a1O88207 Pla2g10-202ENSMUST00000115807 964 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Col5a1O88207 Wdr45-206ENSMUST00000116634 1250 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.54
Col5a1O88207 Gm11675-201ENSMUST00000121873 832 ntBASIC11.71□□□□□ -0.54
Col5a1O88207 Gm15547-201ENSMUST00000122152 333 ntBASIC11.71□□□□□ -0.54
Col5a1O88207 Gm11211-201ENSMUST00000143618 359 ntTSL 3 BASIC11.71□□□□□ -0.54
Col5a1O88207 Pmvk-203ENSMUST00000184515 1156 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Col5a1O88207 Gm8913-201ENSMUST00000209491 641 ntBASIC11.71□□□□□ -0.54
Col5a1O88207 Gm42067-201ENSMUST00000209642 647 ntTSL 2 BASIC11.71□□□□□ -0.54
Col5a1O88207 Csrp2-203ENSMUST00000219502 544 ntTSL 3 BASIC11.71□□□□□ -0.54
Col5a1O88207 CT025551.1-201ENSMUST00000223996 692 ntBASIC11.71□□□□□ -0.54
Col5a1O88207 Prm3-201ENSMUST00000050864 410 ntAPPRIS P1 BASIC11.71□□□□□ -0.54
Col5a1O88207 Gm22058-201ENSMUST00000083393 310 ntBASIC11.71□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms