Protein–RNA interactions for Protein: O54941

Smarce1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1, mousemouse

Known RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarce1O54941 Fn1-211ENSMUST00000187938 7965 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Smarce1O54941 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Smarce1O54941 Arvcf-201ENSMUST00000090103 4620 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Smarce1O54941 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Smarce1O54941 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Smarce1O54941 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Smarce1O54941 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Smarce1O54941 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Smarce1O54941 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Smarce1O54941 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Smarce1O54941 Gm11524-201ENSMUST00000119349 807 ntBASIC15.7■□□□□ 0.1
Smarce1O54941 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Smarce1O54941 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Smarce1O54941 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Smarce1O54941 Gm27306-201ENSMUST00000183970 107 ntBASIC15.7■□□□□ 0.1
Smarce1O54941 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC15.7■□□□□ 0.1
Smarce1O54941 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Smarce1O54941 Gm43094-201ENSMUST00000196549 921 ntBASIC15.7■□□□□ 0.1
Smarce1O54941 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Smarce1O54941 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Smarce1O54941 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Smarce1O54941 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Smarce1O54941 Gm20445-201ENSMUST00000061905 565 ntBASIC15.7■□□□□ 0.1
Smarce1O54941 Sesn3-204ENSMUST00000208222 9125 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Smarce1O54941 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Smarce1O54941 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Smarce1O54941 Tekt2-201ENSMUST00000030658 1492 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Smarce1O54941 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Smarce1O54941 Dmac2-202ENSMUST00000085953 2387 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Smarce1O54941 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Smarce1O54941 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Smarce1O54941 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Smarce1O54941 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC15.69■□□□□ 0.1
Smarce1O54941 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Smarce1O54941 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Smarce1O54941 Dnajc5-201ENSMUST00000072334 6578 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Smarce1O54941 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Smarce1O54941 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Smarce1O54941 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Smarce1O54941 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Smarce1O54941 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Smarce1O54941 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Smarce1O54941 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Smarce1O54941 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Smarce1O54941 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Smarce1O54941 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC15.69■□□□□ 0.1
Smarce1O54941 Gm26464-201ENSMUST00000157094 305 ntBASIC15.69■□□□□ 0.1
Smarce1O54941 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Smarce1O54941 Gm21854-201ENSMUST00000179901 471 ntBASIC15.69■□□□□ 0.1
Smarce1O54941 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
Smarce1O54941 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Smarce1O54941 Gm5279-201ENSMUST00000199575 745 ntBASIC15.69■□□□□ 0.1
Smarce1O54941 Gm19078-201ENSMUST00000206311 727 ntBASIC15.69■□□□□ 0.1
Smarce1O54941 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC15.69■□□□□ 0.1
Smarce1O54941 AC132467.2-202ENSMUST00000227726 559 ntBASIC15.69■□□□□ 0.1
Smarce1O54941 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Smarce1O54941 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Smarce1O54941 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Smarce1O54941 Cacna1g-204ENSMUST00000107785 7523 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Smarce1O54941 Rbpj-207ENSMUST00000201883 4961 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Smarce1O54941 Azi2-201ENSMUST00000044454 3396 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Smarce1O54941 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Smarce1O54941 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Smarce1O54941 Gm8994-202ENSMUST00000204530 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Smarce1O54941 Hectd2-208ENSMUST00000169036 3842 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Smarce1O54941 Vash2-201ENSMUST00000047409 4032 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Smarce1O54941 Col6a3-208ENSMUST00000188587 8285 ntTSL 5 BASIC15.69■□□□□ 0.1
Smarce1O54941 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Smarce1O54941 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
Smarce1O54941 Ywhab-201ENSMUST00000018470 3013 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Smarce1O54941 Grip1-212ENSMUST00000147356 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Smarce1O54941 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Smarce1O54941 Wdr66-202ENSMUST00000121964 4873 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Smarce1O54941 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Smarce1O54941 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Smarce1O54941 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Smarce1O54941 Isg20-202ENSMUST00000118867 697 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
Smarce1O54941 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC15.68■□□□□ 0.1
Smarce1O54941 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Smarce1O54941 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Smarce1O54941 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Smarce1O54941 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC15.68■□□□□ 0.1
Smarce1O54941 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Smarce1O54941 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Smarce1O54941 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
Smarce1O54941 1810008I18Rik-201ENSMUST00000185464 2419 ntBASIC15.68■□□□□ 0.1
Smarce1O54941 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Smarce1O54941 Gm26770-201ENSMUST00000180586 2237 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Smarce1O54941 Atg2b-201ENSMUST00000041055 7546 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Smarce1O54941 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC15.68■□□□□ 0.1
Smarce1O54941 Rbm20-204ENSMUST00000164202 6592 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Smarce1O54941 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Smarce1O54941 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Smarce1O54941 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Smarce1O54941 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Smarce1O54941 Fen1-201ENSMUST00000025651 2341 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Smarce1O54941 Rps6kb1-207ENSMUST00000154617 5531 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Smarce1O54941 Nrd1-201ENSMUST00000065977 4311 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Smarce1O54941 Ntrk2-204ENSMUST00000224259 3049 ntBASIC15.67■□□□□ 0.1
Smarce1O54941 Ano1-201ENSMUST00000033393 4585 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 66 ms