Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Mboat2-201ENSMUST00000078902 2467 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Chd3B1AR17 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Chd3B1AR17 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC12.91□□□□□ -0.34
Chd3B1AR17 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Chd3B1AR17 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Chd3B1AR17 Mlec-201ENSMUST00000112121 5955 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Chd3B1AR17 Foxo3-203ENSMUST00000105502 6848 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Chd3B1AR17 Brms1-201ENSMUST00000116567 1338 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Chd3B1AR17 Gm43579-201ENSMUST00000202387 1307 ntBASIC12.91□□□□□ -0.34
Chd3B1AR17 B230209E15Rik-201ENSMUST00000209115 1597 ntTSL 5 BASIC12.91□□□□□ -0.34
Chd3B1AR17 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Chd3B1AR17 Ddi2-202ENSMUST00000177592 3539 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Chd3B1AR17 Olfr56-204ENSMUST00000203149 1808 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Chd3B1AR17 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Chd3B1AR17 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Chd3B1AR17 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Chd3B1AR17 Olfr1234-202ENSMUST00000111543 1386 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
Chd3B1AR17 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Chd3B1AR17 Spata3-202ENSMUST00000113344 1047 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Chd3B1AR17 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
Chd3B1AR17 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC12.91□□□□□ -0.34
Chd3B1AR17 Gm8801-201ENSMUST00000173255 1064 ntBASIC12.91□□□□□ -0.34
Chd3B1AR17 Gm27501-201ENSMUST00000183599 107 ntBASIC12.91□□□□□ -0.34
Chd3B1AR17 Gm38297-201ENSMUST00000195122 1057 ntBASIC12.91□□□□□ -0.34
Chd3B1AR17 Gm38341-201ENSMUST00000195357 515 ntBASIC12.91□□□□□ -0.34
Chd3B1AR17 Gm20083-202ENSMUST00000206663 1008 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Chd3B1AR17 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Chd3B1AR17 AC135669.1-202ENSMUST00000216742 540 ntBASIC12.91□□□□□ -0.34
Chd3B1AR17 Gm19309-201ENSMUST00000218295 205 ntBASIC12.91□□□□□ -0.34
Chd3B1AR17 Ambp-201ENSMUST00000030041 1268 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Chd3B1AR17 Polr2e-201ENSMUST00000004786 1148 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Chd3B1AR17 Gm11562-201ENSMUST00000073853 817 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
Chd3B1AR17 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Chd3B1AR17 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Chd3B1AR17 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Chd3B1AR17 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Chd3B1AR17 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Chd3B1AR17 Cdk13-207ENSMUST00000223490 12548 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Chd3B1AR17 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Chd3B1AR17 Serpinh1-205ENSMUST00000208119 2173 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Chd3B1AR17 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Chd3B1AR17 AC101945.2-201ENSMUST00000227886 1377 ntBASIC12.91□□□□□ -0.34
Chd3B1AR17 Spsb1-201ENSMUST00000038562 3092 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Chd3B1AR17 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Chd3B1AR17 Rcan2-202ENSMUST00000044895 3363 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Chd3B1AR17 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC12.9□□□□□ -0.34
Chd3B1AR17 Gm12539-201ENSMUST00000121549 1098 ntBASIC12.9□□□□□ -0.34
Chd3B1AR17 Mmgt2-207ENSMUST00000155759 589 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Chd3B1AR17 Gm44069-201ENSMUST00000204898 506 ntBASIC12.9□□□□□ -0.34
Chd3B1AR17 AC133598.1-201ENSMUST00000224327 660 ntBASIC12.9□□□□□ -0.34
Chd3B1AR17 AC154595.3-201ENSMUST00000224579 384 ntBASIC12.9□□□□□ -0.34
Chd3B1AR17 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Chd3B1AR17 1700029I15Rik-201ENSMUST00000054316 364 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Chd3B1AR17 Olfr1368-201ENSMUST00000055298 1064 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
Chd3B1AR17 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Chd3B1AR17 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Chd3B1AR17 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC12.9□□□□□ -0.34
Chd3B1AR17 Dctn2-201ENSMUST00000026479 1784 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Chd3B1AR17 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Chd3B1AR17 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Chd3B1AR17 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Chd3B1AR17 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Chd3B1AR17 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Chd3B1AR17 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC12.9□□□□□ -0.34
Chd3B1AR17 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Chd3B1AR17 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Chd3B1AR17 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Chd3B1AR17 Gm12241-201ENSMUST00000118330 726 ntBASIC12.9□□□□□ -0.34
Chd3B1AR17 Gm12291-201ENSMUST00000121627 311 ntBASIC12.9□□□□□ -0.34
Chd3B1AR17 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC12.9□□□□□ -0.34
Chd3B1AR17 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC12.9□□□□□ -0.34
Chd3B1AR17 Rfxank-203ENSMUST00000212320 1121 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Chd3B1AR17 AC134254.1-201ENSMUST00000221362 167 ntBASIC12.9□□□□□ -0.34
Chd3B1AR17 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Chd3B1AR17 Pla2g6-201ENSMUST00000047816 2963 ntTSL 1 (best) BASIC12.9□□□□□ -0.35
Chd3B1AR17 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
Chd3B1AR17 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
Chd3B1AR17 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
Chd3B1AR17 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.35
Chd3B1AR17 Qsox1-202ENSMUST00000111764 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Chd3B1AR17 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Chd3B1AR17 Gm5989-201ENSMUST00000096092 2077 ntBASIC12.89□□□□□ -0.35
Chd3B1AR17 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Chd3B1AR17 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Chd3B1AR17 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Chd3B1AR17 Cryzl1-204ENSMUST00000122254 845 ntTSL 3 BASIC12.89□□□□□ -0.35
Chd3B1AR17 Gm24548-201ENSMUST00000158650 108 ntBASIC12.89□□□□□ -0.35
Chd3B1AR17 Hspb9-201ENSMUST00000017976 652 ntAPPRIS ALT2 BASIC12.89□□□□□ -0.35
Chd3B1AR17 Gm38158-201ENSMUST00000194617 339 ntBASIC12.89□□□□□ -0.35
Chd3B1AR17 Gm44985-201ENSMUST00000206202 1016 ntBASIC12.89□□□□□ -0.35
Chd3B1AR17 Gm44401-201ENSMUST00000204462 2375 ntBASIC12.89□□□□□ -0.35
Chd3B1AR17 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Chd3B1AR17 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Chd3B1AR17 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Chd3B1AR17 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Chd3B1AR17 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Chd3B1AR17 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Chd3B1AR17 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Chd3B1AR17 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Chd3B1AR17 Gm15459-201ENSMUST00000117405 1941 ntBASIC12.89□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 43.3 ms