Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC12.9□□□□□ -0.34
Msh4Q99MT2 Gm43568-203ENSMUST00000199116 1270 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Msh4Q99MT2 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC12.9□□□□□ -0.34
Msh4Q99MT2 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Msh4Q99MT2 Dpm3-201ENSMUST00000040824 404 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Msh4Q99MT2 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Msh4Q99MT2 Vcl-201ENSMUST00000022369 5267 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Msh4Q99MT2 Fam13b-201ENSMUST00000040506 3343 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Msh4Q99MT2 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
Msh4Q99MT2 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Msh4Q99MT2 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC12.9□□□□□ -0.34
Msh4Q99MT2 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Msh4Q99MT2 Azi2-201ENSMUST00000044454 3396 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Msh4Q99MT2 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Msh4Q99MT2 Edc3-201ENSMUST00000043990 5708 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Msh4Q99MT2 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Msh4Q99MT2 Fn1-213ENSMUST00000188674 7680 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Msh4Q99MT2 Fn1-217ENSMUST00000190780 7694 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Msh4Q99MT2 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC12.9□□□□□ -0.35
Msh4Q99MT2 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Msh4Q99MT2 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Msh4Q99MT2 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC12.89□□□□□ -0.35
Msh4Q99MT2 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Msh4Q99MT2 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Msh4Q99MT2 Evi5l-202ENSMUST00000176072 3932 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Msh4Q99MT2 Mecom-206ENSMUST00000172694 4381 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Msh4Q99MT2 Ces2e-202ENSMUST00000109410 1999 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Msh4Q99MT2 Rinl-201ENSMUST00000059857 2871 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Msh4Q99MT2 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Msh4Q99MT2 Tceanc2-202ENSMUST00000057043 6431 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Msh4Q99MT2 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Msh4Q99MT2 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Msh4Q99MT2 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC12.89□□□□□ -0.35
Msh4Q99MT2 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Msh4Q99MT2 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Msh4Q99MT2 Gm12416-201ENSMUST00000120911 1008 ntBASIC12.89□□□□□ -0.35
Msh4Q99MT2 Kxd1-204ENSMUST00000121623 884 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Msh4Q99MT2 Gm15755-201ENSMUST00000133698 659 ntTSL 3 BASIC12.89□□□□□ -0.35
Msh4Q99MT2 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC12.89□□□□□ -0.35
Msh4Q99MT2 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Msh4Q99MT2 Hddc3-208ENSMUST00000206122 696 ntTSL 3 BASIC12.89□□□□□ -0.35
Msh4Q99MT2 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Msh4Q99MT2 Ngf-201ENSMUST00000035952 904 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
Msh4Q99MT2 Kxd1-201ENSMUST00000093456 1216 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Msh4Q99MT2 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Msh4Q99MT2 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Msh4Q99MT2 Gm21038-201ENSMUST00000222205 1383 ntBASIC12.89□□□□□ -0.35
Msh4Q99MT2 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Msh4Q99MT2 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Msh4Q99MT2 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Msh4Q99MT2 Igfals-201ENSMUST00000050714 2111 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Msh4Q99MT2 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Msh4Q99MT2 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Msh4Q99MT2 Pex12-207ENSMUST00000176518 2501 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Msh4Q99MT2 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Msh4Q99MT2 Gm7899-201ENSMUST00000192935 1897 ntBASIC12.89□□□□□ -0.35
Msh4Q99MT2 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Msh4Q99MT2 Gm36065-202ENSMUST00000219654 1424 ntTSL 5 BASIC12.88□□□□□ -0.35
Msh4Q99MT2 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC12.88□□□□□ -0.35
Msh4Q99MT2 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC12.88□□□□□ -0.35
Msh4Q99MT2 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Msh4Q99MT2 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Msh4Q99MT2 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Msh4Q99MT2 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC12.88□□□□□ -0.35
Msh4Q99MT2 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Msh4Q99MT2 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Msh4Q99MT2 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC12.88□□□□□ -0.35
Msh4Q99MT2 Gm28198-201ENSMUST00000190938 471 ntTSL 3 BASIC12.88□□□□□ -0.35
Msh4Q99MT2 1700029B24Rik-201ENSMUST00000194040 497 ntBASIC12.88□□□□□ -0.35
Msh4Q99MT2 CT030657.3-201ENSMUST00000222707 1200 ntBASIC12.88□□□□□ -0.35
Msh4Q99MT2 AC150560.1-201ENSMUST00000227731 1187 ntBASIC12.88□□□□□ -0.35
Msh4Q99MT2 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Msh4Q99MT2 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
Msh4Q99MT2 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Msh4Q99MT2 Tecpr1-201ENSMUST00000085701 5106 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Msh4Q99MT2 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Msh4Q99MT2 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Msh4Q99MT2 Gpr132-201ENSMUST00000021729 2478 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Msh4Q99MT2 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Msh4Q99MT2 Nrf1-210ENSMUST00000115211 3295 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Msh4Q99MT2 Rnf214-201ENSMUST00000058720 3964 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Msh4Q99MT2 Asxl1-205ENSMUST00000227428 6981 ntAPPRIS ALT2 BASIC12.88□□□□□ -0.35
Msh4Q99MT2 Ercc5-201ENSMUST00000027214 3907 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Msh4Q99MT2 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Msh4Q99MT2 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Msh4Q99MT2 Alox12b-201ENSMUST00000036424 2431 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Msh4Q99MT2 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Msh4Q99MT2 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Msh4Q99MT2 Uqcrq-201ENSMUST00000061326 1521 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Msh4Q99MT2 Sh3kbp1-206ENSMUST00000112456 7317 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Msh4Q99MT2 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Msh4Q99MT2 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Msh4Q99MT2 Kcnk13-201ENSMUST00000049788 3078 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Msh4Q99MT2 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Msh4Q99MT2 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC12.87□□□□□ -0.35
Msh4Q99MT2 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Msh4Q99MT2 Myl6-202ENSMUST00000217733 1668 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Msh4Q99MT2 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Msh4Q99MT2 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Msh4Q99MT2 Gm13730-201ENSMUST00000121036 1462 ntBASIC12.87□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 36.5 ms