Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC15.4■□□□□ 0.06
Vps53Q8CCB4 Gm37424-201ENSMUST00000191727 561 ntBASIC15.4■□□□□ 0.06
Vps53Q8CCB4 Gm42693-201ENSMUST00000196779 631 ntBASIC15.4■□□□□ 0.06
Vps53Q8CCB4 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Vps53Q8CCB4 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Vps53Q8CCB4 Gm867-202ENSMUST00000219979 714 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
Vps53Q8CCB4 Atp6v0c-201ENSMUST00000024932 1183 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Vps53Q8CCB4 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Vps53Q8CCB4 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Vps53Q8CCB4 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Vps53Q8CCB4 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Vps53Q8CCB4 Colgalt1-201ENSMUST00000047903 3207 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Vps53Q8CCB4 Padi2-201ENSMUST00000030765 4774 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Vps53Q8CCB4 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Vps53Q8CCB4 Fam53b-201ENSMUST00000065371 5052 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Vps53Q8CCB4 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Vps53Q8CCB4 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC15.4■□□□□ 0.06
Vps53Q8CCB4 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Vps53Q8CCB4 Evi5l-202ENSMUST00000176072 3932 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
Vps53Q8CCB4 Arhgap11a-203ENSMUST00000110948 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Vps53Q8CCB4 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Vps53Q8CCB4 Zscan30-202ENSMUST00000224144 1458 ntBASIC15.4■□□□□ 0.06
Vps53Q8CCB4 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Vps53Q8CCB4 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Vps53Q8CCB4 Fn1-214ENSMUST00000188894 8043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Vps53Q8CCB4 Ldlrad3-201ENSMUST00000058790 3833 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Vps53Q8CCB4 Gm38346-201ENSMUST00000192379 2639 ntBASIC15.39■□□□□ 0.05
Vps53Q8CCB4 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC15.39■□□□□ 0.05
Vps53Q8CCB4 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Vps53Q8CCB4 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Vps53Q8CCB4 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Vps53Q8CCB4 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
Vps53Q8CCB4 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Vps53Q8CCB4 Oaz1-207ENSMUST00000180036 1044 ntAPPRIS P2 TSL 5 BASIC15.39■□□□□ 0.05
Vps53Q8CCB4 Gm26830-201ENSMUST00000180389 993 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Vps53Q8CCB4 Gm8652-201ENSMUST00000181363 964 ntBASIC15.39■□□□□ 0.05
Vps53Q8CCB4 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
Vps53Q8CCB4 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Vps53Q8CCB4 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Vps53Q8CCB4 Gm11562-201ENSMUST00000073853 817 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
Vps53Q8CCB4 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Vps53Q8CCB4 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Vps53Q8CCB4 Araf-203ENSMUST00000122312 2854 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Vps53Q8CCB4 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Vps53Q8CCB4 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Vps53Q8CCB4 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Vps53Q8CCB4 Amer2-201ENSMUST00000022561 10506 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
Vps53Q8CCB4 Gtpbp1-201ENSMUST00000046463 3398 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Vps53Q8CCB4 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
Vps53Q8CCB4 Gm8775-201ENSMUST00000170943 1327 ntBASIC15.39■□□□□ 0.05
Vps53Q8CCB4 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC15.39■□□□□ 0.05
Vps53Q8CCB4 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Vps53Q8CCB4 Retsat-205ENSMUST00000176364 1647 ntTSL 5 BASIC15.39■□□□□ 0.05
Vps53Q8CCB4 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Vps53Q8CCB4 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
Vps53Q8CCB4 Clmp-201ENSMUST00000034522 4154 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Vps53Q8CCB4 Gtse1-201ENSMUST00000170629 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Vps53Q8CCB4 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Vps53Q8CCB4 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
Vps53Q8CCB4 Fzd4-201ENSMUST00000058755 6720 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Vps53Q8CCB4 Pitpnm3-202ENSMUST00000108508 6450 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Vps53Q8CCB4 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
Vps53Q8CCB4 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Vps53Q8CCB4 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Vps53Q8CCB4 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Vps53Q8CCB4 Gm14660-201ENSMUST00000119809 575 ntBASIC15.38■□□□□ 0.05
Vps53Q8CCB4 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC15.38■□□□□ 0.05
Vps53Q8CCB4 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC15.38■□□□□ 0.05
Vps53Q8CCB4 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC15.38■□□□□ 0.05
Vps53Q8CCB4 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC15.38■□□□□ 0.05
Vps53Q8CCB4 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC15.38■□□□□ 0.05
Vps53Q8CCB4 Ppm1h-208ENSMUST00000162969 811 ntTSL 3 BASIC15.38■□□□□ 0.05
Vps53Q8CCB4 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Vps53Q8CCB4 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC15.38■□□□□ 0.05
Vps53Q8CCB4 Gm27731-201ENSMUST00000185192 107 ntBASIC15.38■□□□□ 0.05
Vps53Q8CCB4 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC15.38■□□□□ 0.05
Vps53Q8CCB4 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC15.38■□□□□ 0.05
Vps53Q8CCB4 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC15.38■□□□□ 0.05
Vps53Q8CCB4 Gm7561-201ENSMUST00000211203 886 ntBASIC15.38■□□□□ 0.05
Vps53Q8CCB4 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC15.38■□□□□ 0.05
Vps53Q8CCB4 Gm18041-201ENSMUST00000218210 618 ntBASIC15.38■□□□□ 0.05
Vps53Q8CCB4 Lrp8os1-201ENSMUST00000030352 672 ntTSL 5 BASIC15.38■□□□□ 0.05
Vps53Q8CCB4 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Vps53Q8CCB4 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC15.38■□□□□ 0.05
Vps53Q8CCB4 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Vps53Q8CCB4 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Vps53Q8CCB4 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Vps53Q8CCB4 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Vps53Q8CCB4 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Vps53Q8CCB4 Gm38037-201ENSMUST00000192600 1624 ntBASIC15.38■□□□□ 0.05
Vps53Q8CCB4 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
Vps53Q8CCB4 Cacna1g-205ENSMUST00000107786 7984 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Vps53Q8CCB4 Cacna1g-210ENSMUST00000107792 7981 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
Vps53Q8CCB4 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Vps53Q8CCB4 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
Vps53Q8CCB4 Gm34376-201ENSMUST00000218529 2107 ntTSL 5 BASIC15.38■□□□□ 0.05
Vps53Q8CCB4 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Vps53Q8CCB4 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
Vps53Q8CCB4 Gm28386-201ENSMUST00000189147 1849 ntBASIC15.38■□□□□ 0.05
Vps53Q8CCB4 AL645783.1-201ENSMUST00000221416 1832 ntBASIC15.38■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 39.2 ms