Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Lgals12-202ENSMUST00000099729 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trim56Q80VI1 Rnf214-205ENSMUST00000160699 2287 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trim56Q80VI1 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC15.58■□□□□ 0.08
Trim56Q80VI1 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trim56Q80VI1 Ighv2-9-201ENSMUST00000103451 362 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
Trim56Q80VI1 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trim56Q80VI1 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC15.58■□□□□ 0.08
Trim56Q80VI1 Gm43818-201ENSMUST00000200605 466 ntBASIC15.58■□□□□ 0.08
Trim56Q80VI1 AC154276.1-201ENSMUST00000228874 1299 ntBASIC15.58■□□□□ 0.08
Trim56Q80VI1 Majin-201ENSMUST00000025699 1239 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Trim56Q80VI1 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trim56Q80VI1 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trim56Q80VI1 Otud6a-201ENSMUST00000060241 873 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
Trim56Q80VI1 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Trim56Q80VI1 Brms1-201ENSMUST00000116567 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trim56Q80VI1 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trim56Q80VI1 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trim56Q80VI1 Nmral1-204ENSMUST00000120056 2440 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trim56Q80VI1 Slc4a7-201ENSMUST00000057015 8132 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trim56Q80VI1 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC15.58■□□□□ 0.08
Trim56Q80VI1 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trim56Q80VI1 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC15.58■□□□□ 0.08
Trim56Q80VI1 Mageb10-ps-201ENSMUST00000119697 1407 ntBASIC15.58■□□□□ 0.08
Trim56Q80VI1 Gm7553-201ENSMUST00000185805 1426 ntBASIC15.58■□□□□ 0.08
Trim56Q80VI1 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trim56Q80VI1 P3h2-201ENSMUST00000039990 3283 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trim56Q80VI1 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC15.58■□□□□ 0.08
Trim56Q80VI1 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trim56Q80VI1 Adcyap1r1-206ENSMUST00000167234 1575 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
Trim56Q80VI1 Armcx1-206ENSMUST00000113201 2228 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
Trim56Q80VI1 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trim56Q80VI1 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim56Q80VI1 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim56Q80VI1 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim56Q80VI1 Gm10339-203ENSMUST00000225409 1671 ntBASIC15.57■□□□□ 0.08
Trim56Q80VI1 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim56Q80VI1 Gm38577-201ENSMUST00000221531 4545 ntBASIC15.57■□□□□ 0.08
Trim56Q80VI1 Il34-204ENSMUST00000150680 1796 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Trim56Q80VI1 Mfsd4a-205ENSMUST00000144548 3288 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Trim56Q80VI1 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim56Q80VI1 Lrp10-201ENSMUST00000022782 4228 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim56Q80VI1 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim56Q80VI1 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim56Q80VI1 Phldb1-213ENSMUST00000144251 3589 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Trim56Q80VI1 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Trim56Q80VI1 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Trim56Q80VI1 Gm23931-201ENSMUST00000103842 109 ntBASIC15.57■□□□□ 0.08
Trim56Q80VI1 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Trim56Q80VI1 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC15.57■□□□□ 0.08
Trim56Q80VI1 Gm1335-201ENSMUST00000121653 386 ntBASIC15.57■□□□□ 0.08
Trim56Q80VI1 Gm16479-201ENSMUST00000121706 932 ntBASIC15.57■□□□□ 0.08
Trim56Q80VI1 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Trim56Q80VI1 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim56Q80VI1 Gm38293-201ENSMUST00000193209 600 ntTSL 2 BASIC15.57■□□□□ 0.08
Trim56Q80VI1 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC15.57■□□□□ 0.08
Trim56Q80VI1 Gm34376-201ENSMUST00000218529 2107 ntTSL 5 BASIC15.57■□□□□ 0.08
Trim56Q80VI1 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC15.57■□□□□ 0.08
Trim56Q80VI1 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
Trim56Q80VI1 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Trim56Q80VI1 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim56Q80VI1 Micu1-201ENSMUST00000020311 2336 ntTSL 5 BASIC15.57■□□□□ 0.08
Trim56Q80VI1 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim56Q80VI1 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim56Q80VI1 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC15.57■□□□□ 0.08
Trim56Q80VI1 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim56Q80VI1 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim56Q80VI1 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Trim56Q80VI1 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Trim56Q80VI1 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim56Q80VI1 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Trim56Q80VI1 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim56Q80VI1 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Trim56Q80VI1 Ormdl1-201ENSMUST00000027266 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trim56Q80VI1 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Trim56Q80VI1 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Trim56Q80VI1 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trim56Q80VI1 Rcan2-202ENSMUST00000044895 3363 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Trim56Q80VI1 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC15.56■□□□□ 0.08
Trim56Q80VI1 Tspyl5-201ENSMUST00000042021 4010 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
Trim56Q80VI1 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Trim56Q80VI1 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trim56Q80VI1 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trim56Q80VI1 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Trim56Q80VI1 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
Trim56Q80VI1 Surf2-201ENSMUST00000015017 1203 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trim56Q80VI1 Mmgt2-207ENSMUST00000155759 589 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trim56Q80VI1 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC15.56■□□□□ 0.08
Trim56Q80VI1 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC15.56■□□□□ 0.08
Trim56Q80VI1 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC15.56■□□□□ 0.08
Trim56Q80VI1 AC135669.1-202ENSMUST00000216742 540 ntBASIC15.56■□□□□ 0.08
Trim56Q80VI1 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trim56Q80VI1 Pou5f2-201ENSMUST00000175955 1394 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
Trim56Q80VI1 Cadps2-213ENSMUST00000166458 4598 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
Trim56Q80VI1 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trim56Q80VI1 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trim56Q80VI1 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Trim56Q80VI1 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trim56Q80VI1 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trim56Q80VI1 Gm10176-201ENSMUST00000159707 2264 ntBASIC15.56■□□□□ 0.08
Trim56Q80VI1 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 126.7 ms