Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Mup-ps23-201ENSMUST00000118063 630 ntBASIC15.58■□□□□ 0.08
Limch1Q3UH68 Gm15376-201ENSMUST00000122258 783 ntBASIC15.58■□□□□ 0.08
Limch1Q3UH68 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Limch1Q3UH68 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
Limch1Q3UH68 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Limch1Q3UH68 Gm27486-201ENSMUST00000184923 80 ntBASIC15.58■□□□□ 0.08
Limch1Q3UH68 Mir6420-201ENSMUST00000185032 102 ntBASIC15.58■□□□□ 0.08
Limch1Q3UH68 Gm38144-201ENSMUST00000192790 465 ntBASIC15.58■□□□□ 0.08
Limch1Q3UH68 Gm45841-201ENSMUST00000207700 164 ntBASIC15.58■□□□□ 0.08
Limch1Q3UH68 Gm8463-201ENSMUST00000208573 613 ntBASIC15.58■□□□□ 0.08
Limch1Q3UH68 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC15.58■□□□□ 0.08
Limch1Q3UH68 Alg2-201ENSMUST00000044148 3021 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Limch1Q3UH68 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Limch1Q3UH68 Slc16a3-208ENSMUST00000168579 4335 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Limch1Q3UH68 Canx-201ENSMUST00000020637 3779 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Limch1Q3UH68 Gm5779-202ENSMUST00000219564 1477 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Limch1Q3UH68 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
Limch1Q3UH68 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC15.58■□□□□ 0.08
Limch1Q3UH68 Diaph3-202ENSMUST00000168889 4582 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Limch1Q3UH68 Diaph3-201ENSMUST00000022599 4582 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
Limch1Q3UH68 Mgat3-201ENSMUST00000044970 4665 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Limch1Q3UH68 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Limch1Q3UH68 Ak4-201ENSMUST00000102780 4186 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
Limch1Q3UH68 Cdyl-202ENSMUST00000163595 3575 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Limch1Q3UH68 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Limch1Q3UH68 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Limch1Q3UH68 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Limch1Q3UH68 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Limch1Q3UH68 Klhl30-201ENSMUST00000027533 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Limch1Q3UH68 Eif4e2-206ENSMUST00000113233 1807 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Limch1Q3UH68 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC15.57■□□□□ 0.08
Limch1Q3UH68 Gm5989-201ENSMUST00000096092 2077 ntBASIC15.57■□□□□ 0.08
Limch1Q3UH68 Gm12957-201ENSMUST00000117835 377 ntBASIC15.57■□□□□ 0.08
Limch1Q3UH68 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC15.57■□□□□ 0.08
Limch1Q3UH68 Pmepa1os-201ENSMUST00000150185 680 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Limch1Q3UH68 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC15.57■□□□□ 0.08
Limch1Q3UH68 AC192088.1-201ENSMUST00000227561 301 ntBASIC15.57■□□□□ 0.08
Limch1Q3UH68 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
Limch1Q3UH68 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Limch1Q3UH68 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Limch1Q3UH68 Gm9200-201ENSMUST00000118513 1354 ntBASIC15.57■□□□□ 0.08
Limch1Q3UH68 Actr8-204ENSMUST00000224797 2328 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
Limch1Q3UH68 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Limch1Q3UH68 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Limch1Q3UH68 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Limch1Q3UH68 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Limch1Q3UH68 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Limch1Q3UH68 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC15.57■□□□□ 0.08
Limch1Q3UH68 AC122314.1-201ENSMUST00000223056 2239 ntBASIC15.56■□□□□ 0.08
Limch1Q3UH68 Ylpm1-201ENSMUST00000021670 7003 ntAPPRIS P2 TSL 5 BASIC15.56■□□□□ 0.08
Limch1Q3UH68 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Limch1Q3UH68 Pex12-207ENSMUST00000176518 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Limch1Q3UH68 Map10-201ENSMUST00000053078 3542 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
Limch1Q3UH68 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Limch1Q3UH68 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Limch1Q3UH68 Tpd52l2-203ENSMUST00000108799 985 ntTSL 5 BASIC15.56■□□□□ 0.08
Limch1Q3UH68 Gm15429-201ENSMUST00000151268 798 ntBASIC15.56■□□□□ 0.08
Limch1Q3UH68 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC15.56■□□□□ 0.08
Limch1Q3UH68 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Limch1Q3UH68 Fam24a-203ENSMUST00000207784 600 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Limch1Q3UH68 Snx24-201ENSMUST00000025417 994 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Limch1Q3UH68 Grm6-201ENSMUST00000000631 4291 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Limch1Q3UH68 Gapvd1-202ENSMUST00000102800 8339 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Limch1Q3UH68 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Limch1Q3UH68 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Limch1Q3UH68 Gm10561-201ENSMUST00000181563 1943 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Limch1Q3UH68 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Limch1Q3UH68 Rad54b-202ENSMUST00000095145 2403 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Limch1Q3UH68 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Limch1Q3UH68 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Limch1Q3UH68 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Limch1Q3UH68 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
Limch1Q3UH68 Zfp618-203ENSMUST00000107415 8826 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
Limch1Q3UH68 Dhx57-201ENSMUST00000038166 4918 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
Limch1Q3UH68 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Limch1Q3UH68 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Limch1Q3UH68 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Limch1Q3UH68 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Limch1Q3UH68 Hspb7-201ENSMUST00000102486 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Limch1Q3UH68 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC15.55■□□□□ 0.08
Limch1Q3UH68 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Limch1Q3UH68 Gm15459-201ENSMUST00000117405 1941 ntBASIC15.55■□□□□ 0.08
Limch1Q3UH68 Gm8355-201ENSMUST00000177767 1941 ntBASIC15.55■□□□□ 0.08
Limch1Q3UH68 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC15.55■□□□□ 0.08
Limch1Q3UH68 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Limch1Q3UH68 Ttll3-206ENSMUST00000204026 1472 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Limch1Q3UH68 Gm21038-201ENSMUST00000222205 1383 ntBASIC15.55■□□□□ 0.08
Limch1Q3UH68 Gm13226-201ENSMUST00000117838 404 ntBASIC15.55■□□□□ 0.08
Limch1Q3UH68 Mrpl40-202ENSMUST00000119273 778 ntTSL 3 BASIC15.55■□□□□ 0.08
Limch1Q3UH68 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC15.55■□□□□ 0.08
Limch1Q3UH68 Mir7221-201ENSMUST00000184009 72 ntBASIC15.55■□□□□ 0.08
Limch1Q3UH68 Gm33460-201ENSMUST00000212286 536 ntTSL 5 BASIC15.55■□□□□ 0.08
Limch1Q3UH68 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Limch1Q3UH68 Camkmt-201ENSMUST00000095188 972 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Limch1Q3UH68 Vps35-201ENSMUST00000034131 3474 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Limch1Q3UH68 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Limch1Q3UH68 Tbc1d9b-201ENSMUST00000093138 4407 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
Limch1Q3UH68 Igfals-201ENSMUST00000050714 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Limch1Q3UH68 Fam155a-201ENSMUST00000110969 3388 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
Limch1Q3UH68 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms