Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
Rfx1P48377 Eif3j1-201ENSMUST00000028668 5413 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Rfx1P48377 Fam214b-201ENSMUST00000036462 3074 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Rfx1P48377 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Rfx1P48377 Stk33-204ENSMUST00000121748 2295 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
Rfx1P48377 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Rfx1P48377 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Rfx1P48377 Gm20700-201ENSMUST00000176749 2206 ntTSL 3 BASIC15.79■□□□□ 0.12
Rfx1P48377 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Rfx1P48377 Nub1-202ENSMUST00000197407 3546 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Rfx1P48377 Dtx1-201ENSMUST00000031607 4035 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Rfx1P48377 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Rfx1P48377 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Rfx1P48377 Gm37437-201ENSMUST00000194451 1937 ntBASIC15.79■□□□□ 0.12
Rfx1P48377 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC15.79■□□□□ 0.12
Rfx1P48377 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC15.79■□□□□ 0.12
Rfx1P48377 Gm12585-201ENSMUST00000117307 290 ntBASIC15.79■□□□□ 0.12
Rfx1P48377 Gm14822-201ENSMUST00000122247 291 ntBASIC15.79■□□□□ 0.12
Rfx1P48377 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC15.79■□□□□ 0.12
Rfx1P48377 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Rfx1P48377 Synj2bp-205ENSMUST00000169158 691 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Rfx1P48377 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC15.79■□□□□ 0.12
Rfx1P48377 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Rfx1P48377 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Rfx1P48377 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC15.79■□□□□ 0.12
Rfx1P48377 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC15.79■□□□□ 0.12
Rfx1P48377 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Rfx1P48377 Serpina16-201ENSMUST00000095451 1257 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
Rfx1P48377 Polrmt-201ENSMUST00000020580 3755 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Rfx1P48377 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Rfx1P48377 C530008M17Rik-202ENSMUST00000120639 6826 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Rfx1P48377 C530008M17Rik-211ENSMUST00000163347 6835 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Rfx1P48377 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Rfx1P48377 Rbak-202ENSMUST00000165318 3480 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Rfx1P48377 Sidt1-205ENSMUST00000136381 4404 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
Rfx1P48377 Akr1d1-201ENSMUST00000040987 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Rfx1P48377 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Rfx1P48377 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
Rfx1P48377 Zbtb7b-202ENSMUST00000107432 3639 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Rfx1P48377 C2cd4c-201ENSMUST00000059699 6729 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Rfx1P48377 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Rfx1P48377 Tmem132a-202ENSMUST00000120524 3895 ntTSL 5 BASIC15.78■□□□□ 0.12
Rfx1P48377 Xylb-201ENSMUST00000039610 3383 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Rfx1P48377 Agt-201ENSMUST00000063278 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Rfx1P48377 Matn2-203ENSMUST00000226766 3252 ntBASIC15.78■□□□□ 0.12
Rfx1P48377 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Rfx1P48377 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC15.78■□□□□ 0.12
Rfx1P48377 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC15.78■□□□□ 0.12
Rfx1P48377 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Rfx1P48377 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Rfx1P48377 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Rfx1P48377 Cd63-ps-201ENSMUST00000145417 875 ntBASIC15.78■□□□□ 0.12
Rfx1P48377 Gm37277-201ENSMUST00000194052 1111 ntBASIC15.78■□□□□ 0.12
Rfx1P48377 Gm43703-201ENSMUST00000200523 763 ntBASIC15.78■□□□□ 0.12
Rfx1P48377 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
Rfx1P48377 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
Rfx1P48377 AC140397.2-201ENSMUST00000224213 834 ntBASIC15.78■□□□□ 0.12
Rfx1P48377 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Rfx1P48377 Serpinb12-201ENSMUST00000081277 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Rfx1P48377 Med28-205ENSMUST00000156481 4560 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Rfx1P48377 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
Rfx1P48377 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Rfx1P48377 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
Rfx1P48377 Spag9-202ENSMUST00000041956 7340 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Rfx1P48377 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Rfx1P48377 Dll1-201ENSMUST00000014917 3581 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Rfx1P48377 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC15.78■□□□□ 0.12
Rfx1P48377 Nrxn1-207ENSMUST00000160844 9309 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Rfx1P48377 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Rfx1P48377 2810403A07Rik-201ENSMUST00000029696 2981 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Rfx1P48377 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Rfx1P48377 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Rfx1P48377 Terf2ip-201ENSMUST00000052138 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Rfx1P48377 Fchsd1-201ENSMUST00000043437 4270 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Rfx1P48377 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Rfx1P48377 Vcl-201ENSMUST00000022369 5267 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Rfx1P48377 Adrb3-201ENSMUST00000081438 2795 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Rfx1P48377 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC15.77■□□□□ 0.12
Rfx1P48377 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Rfx1P48377 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC15.77■□□□□ 0.12
Rfx1P48377 Gm44241-201ENSMUST00000203230 1662 ntBASIC15.77■□□□□ 0.12
Rfx1P48377 4933430H06Rik-201ENSMUST00000200924 1343 ntBASIC15.77■□□□□ 0.12
Rfx1P48377 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Rfx1P48377 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Rfx1P48377 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Rfx1P48377 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC15.77■□□□□ 0.12
Rfx1P48377 Mir7221-201ENSMUST00000184009 72 ntBASIC15.77■□□□□ 0.12
Rfx1P48377 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC15.77■□□□□ 0.12
Rfx1P48377 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Rfx1P48377 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
Rfx1P48377 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
Rfx1P48377 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Rfx1P48377 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC15.77■□□□□ 0.11
Rfx1P48377 Gm42690-201ENSMUST00000197921 1836 ntBASIC15.77■□□□□ 0.11
Rfx1P48377 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
Rfx1P48377 Gsdma3-201ENSMUST00000073295 1477 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Rfx1P48377 Fen1-201ENSMUST00000025651 2341 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Rfx1P48377 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Rfx1P48377 Sbno2-209ENSMUST00000219260 4850 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
Rfx1P48377 Pnpla5-201ENSMUST00000019012 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms