Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gm7395-201ENSMUST00000216059 1045 ntBASIC17.07■□□□□ 0.32
Col18a1P39061 Gm26448-201ENSMUST00000082446 203 ntBASIC17.07■□□□□ 0.32
Col18a1P39061 Olfr1230-201ENSMUST00000099787 918 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Col18a1P39061 Samd4b-204ENSMUST00000208199 4391 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Col18a1P39061 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col18a1P39061 Fam110a-203ENSMUST00000109864 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col18a1P39061 Myadm-203ENSMUST00000203328 1899 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
Col18a1P39061 Ube2c-201ENSMUST00000001439 2191 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Col18a1P39061 Gm10710-201ENSMUST00000047876 3971 ntBASIC17.07■□□□□ 0.32
Col18a1P39061 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col18a1P39061 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col18a1P39061 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col18a1P39061 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col18a1P39061 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col18a1P39061 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Col18a1P39061 Sun3-202ENSMUST00000102909 1205 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col18a1P39061 Gm12969-201ENSMUST00000120199 1004 ntBASIC17.07■□□□□ 0.32
Col18a1P39061 Gm4879-201ENSMUST00000122190 1272 ntBASIC17.07■□□□□ 0.32
Col18a1P39061 Gm11683-201ENSMUST00000147006 918 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Col18a1P39061 Gm20537-202ENSMUST00000173131 889 ntAPPRIS P5 TSL 5 BASIC17.07■□□□□ 0.32
Col18a1P39061 Gm9111-201ENSMUST00000219394 709 ntBASIC17.07■□□□□ 0.32
Col18a1P39061 AC140375.1-201ENSMUST00000225421 694 ntBASIC17.07■□□□□ 0.32
Col18a1P39061 Stx5a-202ENSMUST00000073430 2112 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col18a1P39061 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC17.07■□□□□ 0.32
Col18a1P39061 Ccdc60-202ENSMUST00000086483 2168 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Col18a1P39061 Rgs6-207ENSMUST00000186323 1308 ntTSL 5 BASIC17.07■□□□□ 0.32
Col18a1P39061 Spata7-203ENSMUST00000101146 1913 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Col18a1P39061 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col18a1P39061 Ecsit-204ENSMUST00000180180 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col18a1P39061 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col18a1P39061 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col18a1P39061 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col18a1P39061 Amz2-203ENSMUST00000103061 1832 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col18a1P39061 Hsd3b4-201ENSMUST00000179429 1575 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
Col18a1P39061 Gm10681-203ENSMUST00000186215 1575 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
Col18a1P39061 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col18a1P39061 Ccdc71-201ENSMUST00000061209 3092 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col18a1P39061 Gm13394-201ENSMUST00000121658 1000 ntBASIC17.06■□□□□ 0.32
Col18a1P39061 Gm13830-203ENSMUST00000148916 247 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Col18a1P39061 Gm11706-201ENSMUST00000151282 316 ntTSL 5 BASIC17.06■□□□□ 0.32
Col18a1P39061 Gm23045-201ENSMUST00000175041 96 ntBASIC17.06■□□□□ 0.32
Col18a1P39061 Gm44329-201ENSMUST00000197469 112 ntBASIC17.06■□□□□ 0.32
Col18a1P39061 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC17.06■□□□□ 0.32
Col18a1P39061 AC169036.1-201ENSMUST00000227994 296 ntBASIC17.06■□□□□ 0.32
Col18a1P39061 Scg5-201ENSMUST00000024005 1208 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col18a1P39061 Higd2a-201ENSMUST00000026986 648 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col18a1P39061 Cd37-202ENSMUST00000098461 1227 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col18a1P39061 Zfp957-202ENSMUST00000161649 2751 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Col18a1P39061 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col18a1P39061 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col18a1P39061 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Col18a1P39061 Psap-202ENSMUST00000105465 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col18a1P39061 Gm39822-201ENSMUST00000212253 2284 ntTSL 5 BASIC17.06■□□□□ 0.32
Col18a1P39061 Gm13142-201ENSMUST00000117213 1453 ntBASIC17.06■□□□□ 0.32
Col18a1P39061 Gm37297-201ENSMUST00000192974 2384 ntBASIC17.06■□□□□ 0.32
Col18a1P39061 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Col18a1P39061 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC17.05■□□□□ 0.32
Col18a1P39061 Gm2420-202ENSMUST00000202224 2249 ntBASIC17.05■□□□□ 0.32
Col18a1P39061 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col18a1P39061 Gm10461-201ENSMUST00000202073 4786 ntBASIC17.05■□□□□ 0.32
Col18a1P39061 Nppa-201ENSMUST00000103230 865 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col18a1P39061 Gm13605-201ENSMUST00000124489 658 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Col18a1P39061 Dnmt3bos-201ENSMUST00000124988 718 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Col18a1P39061 Siglech-205ENSMUST00000165045 1062 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col18a1P39061 Gm37299-201ENSMUST00000193951 826 ntBASIC17.05■□□□□ 0.32
Col18a1P39061 Gm19091-201ENSMUST00000208120 978 ntBASIC17.05■□□□□ 0.32
Col18a1P39061 Gm3619-201ENSMUST00000219947 775 ntBASIC17.05■□□□□ 0.32
Col18a1P39061 Mir483-201ENSMUST00000093631 73 ntBASIC17.05■□□□□ 0.32
Col18a1P39061 Orc3-201ENSMUST00000048706 2300 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col18a1P39061 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Col18a1P39061 AC171277.1-201ENSMUST00000216902 1441 ntBASIC17.05■□□□□ 0.32
Col18a1P39061 Slc10a1-203ENSMUST00000218342 1411 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col18a1P39061 Hao1-201ENSMUST00000028704 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col18a1P39061 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col18a1P39061 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col18a1P39061 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col18a1P39061 Dph7-201ENSMUST00000028351 1666 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col18a1P39061 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col18a1P39061 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col18a1P39061 Gm43134-201ENSMUST00000199434 1886 ntBASIC17.05■□□□□ 0.32
Col18a1P39061 B430119L08Rik-201ENSMUST00000130054 1994 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Col18a1P39061 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col18a1P39061 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col18a1P39061 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col18a1P39061 Gm11354-201ENSMUST00000121974 422 ntBASIC17.05■□□□□ 0.32
Col18a1P39061 Hmgn3-201ENSMUST00000161796 862 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col18a1P39061 Gm15996-201ENSMUST00000161925 762 ntTSL 5 BASIC17.05■□□□□ 0.32
Col18a1P39061 1700025F24Rik-201ENSMUST00000185238 894 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Col18a1P39061 Rpain-201ENSMUST00000018593 1100 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col18a1P39061 Pgpep1l-201ENSMUST00000032770 953 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Col18a1P39061 Add2-208ENSMUST00000203786 2289 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col18a1P39061 Armc7-201ENSMUST00000035240 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col18a1P39061 Klk1b16-201ENSMUST00000005933 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col18a1P39061 Cyp2c53-ps-203ENSMUST00000176493 1443 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Col18a1P39061 Suclg1-201ENSMUST00000064740 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col18a1P39061 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Col18a1P39061 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col18a1P39061 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC17.04■□□□□ 0.32
Col18a1P39061 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col18a1P39061 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 59.3 ms