Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC10.8□□□□□ -0.68
Sdc1P18828 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC10.8□□□□□ -0.68
Sdc1P18828 Mroh1-204ENSMUST00000159218 5085 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
Sdc1P18828 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC10.8□□□□□ -0.68
Sdc1P18828 Kif26b-201ENSMUST00000160789 6216 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Sdc1P18828 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Sdc1P18828 Gm13597-201ENSMUST00000121239 375 ntBASIC10.8□□□□□ -0.68
Sdc1P18828 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC10.8□□□□□ -0.68
Sdc1P18828 Gm27301-201ENSMUST00000184012 127 ntBASIC10.8□□□□□ -0.68
Sdc1P18828 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Sdc1P18828 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC10.8□□□□□ -0.68
Sdc1P18828 Gm42670-201ENSMUST00000201816 1292 ntBASIC10.8□□□□□ -0.68
Sdc1P18828 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC10.8□□□□□ -0.68
Sdc1P18828 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC10.8□□□□□ -0.68
Sdc1P18828 Gm45841-201ENSMUST00000207700 164 ntBASIC10.8□□□□□ -0.68
Sdc1P18828 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC10.8□□□□□ -0.68
Sdc1P18828 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC10.8□□□□□ -0.68
Sdc1P18828 AC131997.1-201ENSMUST00000228611 1229 ntBASIC10.8□□□□□ -0.68
Sdc1P18828 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Sdc1P18828 Ptbp1-216ENSMUST00000172282 3110 ntAPPRIS P4 TSL 1 (best) BASIC10.8□□□□□ -0.68
Sdc1P18828 Gm13410-201ENSMUST00000117058 1415 ntBASIC10.8□□□□□ -0.68
Sdc1P18828 Zeb2-212ENSMUST00000176438 9124 ntAPPRIS P2 TSL 5 BASIC10.8□□□□□ -0.68
Sdc1P18828 Syncrip-210ENSMUST00000174391 6257 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Sdc1P18828 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC10.8□□□□□ -0.68
Sdc1P18828 Emilin1-201ENSMUST00000031055 3852 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Sdc1P18828 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC10.8□□□□□ -0.68
Sdc1P18828 Ddx46-201ENSMUST00000099479 5664 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
Sdc1P18828 Abhd18-202ENSMUST00000108078 2492 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Sdc1P18828 Sec23a-201ENSMUST00000021375 4109 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Sdc1P18828 Nrsn2-201ENSMUST00000079278 1455 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Sdc1P18828 Wdr25-206ENSMUST00000221510 1600 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Sdc1P18828 Mtus1-202ENSMUST00000059115 6548 ntTSL 5 BASIC10.8□□□□□ -0.68
Sdc1P18828 Ptpn2-203ENSMUST00000122412 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Sdc1P18828 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Sdc1P18828 Npr2-202ENSMUST00000107874 3480 ntTSL 5 BASIC10.79□□□□□ -0.68
Sdc1P18828 Usp16-202ENSMUST00000119504 2562 ntTSL 5 BASIC10.79□□□□□ -0.68
Sdc1P18828 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.68
Sdc1P18828 Pde6c-201ENSMUST00000025956 2586 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Sdc1P18828 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Sdc1P18828 Ctnnbl1-201ENSMUST00000029178 2442 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Sdc1P18828 Kctd18-210ENSMUST00000164963 2114 ntTSL 5 BASIC10.79□□□□□ -0.68
Sdc1P18828 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Sdc1P18828 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC10.79□□□□□ -0.68
Sdc1P18828 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Sdc1P18828 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Sdc1P18828 Gm18856-201ENSMUST00000178096 1374 ntBASIC10.79□□□□□ -0.68
Sdc1P18828 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Sdc1P18828 Hkdc1-201ENSMUST00000020277 3517 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Sdc1P18828 Tmem200a-203ENSMUST00000218232 3510 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Sdc1P18828 Vsx2-202ENSMUST00000169934 3249 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Sdc1P18828 Rnf17-201ENSMUST00000095793 5264 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Sdc1P18828 B230217C12Rik-202ENSMUST00000155954 2181 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Sdc1P18828 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Sdc1P18828 Dmbt1-201ENSMUST00000084509 6243 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
Sdc1P18828 Gtf2ird1-207ENSMUST00000111245 3299 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Sdc1P18828 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
Sdc1P18828 Vezf1-201ENSMUST00000018521 4583 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Sdc1P18828 Gm26823-201ENSMUST00000181425 2361 ntTSL 5 BASIC10.79□□□□□ -0.68
Sdc1P18828 Aff3-202ENSMUST00000039827 6010 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.68
Sdc1P18828 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Sdc1P18828 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
Sdc1P18828 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.68
Sdc1P18828 AA619741-201ENSMUST00000195095 646 ntBASIC10.79□□□□□ -0.68
Sdc1P18828 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC10.79□□□□□ -0.68
Sdc1P18828 Gm4971-201ENSMUST00000205991 1108 ntBASIC10.79□□□□□ -0.68
Sdc1P18828 Gm5364-201ENSMUST00000216789 889 ntBASIC10.79□□□□□ -0.68
Sdc1P18828 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Sdc1P18828 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Sdc1P18828 Mcrip1-201ENSMUST00000034913 1205 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Sdc1P18828 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Sdc1P18828 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC10.79□□□□□ -0.68
Sdc1P18828 Gm7461-201ENSMUST00000058918 827 ntBASIC10.79□□□□□ -0.68
Sdc1P18828 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Sdc1P18828 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Sdc1P18828 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Sdc1P18828 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Sdc1P18828 Slc52a2-201ENSMUST00000023220 2700 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Sdc1P18828 Pcsk7-201ENSMUST00000039059 3876 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Sdc1P18828 Bcl11a-201ENSMUST00000000881 3061 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Sdc1P18828 Slc6a6-201ENSMUST00000032185 6186 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Sdc1P18828 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Sdc1P18828 1110046J04Rik-202ENSMUST00000180906 2776 ntBASIC10.79□□□□□ -0.68
Sdc1P18828 Dnaic2-202ENSMUST00000092469 2799 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
Sdc1P18828 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Sdc1P18828 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC10.79□□□□□ -0.68
Sdc1P18828 Zfp853-203ENSMUST00000212715 3133 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.68
Sdc1P18828 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Sdc1P18828 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Sdc1P18828 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
Sdc1P18828 Ttll12-201ENSMUST00000016901 3220 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Sdc1P18828 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Sdc1P18828 Olfr1234-202ENSMUST00000111543 1386 ntAPPRIS P1 TSL 2 BASIC10.78□□□□□ -0.68
Sdc1P18828 Srsf5-205ENSMUST00000110356 1568 ntAPPRIS P3 TSL 5 BASIC10.78□□□□□ -0.68
Sdc1P18828 Gm37014-201ENSMUST00000194723 2253 ntBASIC10.78□□□□□ -0.68
Sdc1P18828 Micalcl-201ENSMUST00000033033 2259 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Sdc1P18828 Gfap-201ENSMUST00000067444 2648 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Sdc1P18828 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Sdc1P18828 Trmt1-203ENSMUST00000109767 2138 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
Sdc1P18828 Cul5-201ENSMUST00000034529 3585 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Sdc1P18828 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Retrieved 100 of 76,532 protein–RNA pairs in 43.4 ms