Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col1a1P11087 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC15.29■□□□□ 0.04
Col1a1P11087 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col1a1P11087 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col1a1P11087 5430400D12Rik-201ENSMUST00000181717 1690 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Col1a1P11087 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Col1a1P11087 Zar1l-201ENSMUST00000118769 895 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col1a1P11087 Gm9550-201ENSMUST00000161130 862 ntBASIC15.28■□□□□ 0.04
Col1a1P11087 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
Col1a1P11087 Nme9-202ENSMUST00000163199 1196 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Col1a1P11087 Gm17040-202ENSMUST00000170597 889 ntBASIC15.28■□□□□ 0.04
Col1a1P11087 Gm18734-201ENSMUST00000172937 808 ntBASIC15.28■□□□□ 0.04
Col1a1P11087 1110038B12Rik-203ENSMUST00000173070 434 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Col1a1P11087 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Col1a1P11087 Ighv8-4-201ENSMUST00000178949 294 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Col1a1P11087 1110002L01Rik-203ENSMUST00000179637 586 ntTSL 5 BASIC15.28■□□□□ 0.04
Col1a1P11087 Fgfr3-ps-201ENSMUST00000195511 1137 ntBASIC15.28■□□□□ 0.04
Col1a1P11087 Gm45433-201ENSMUST00000209386 247 ntBASIC15.28■□□□□ 0.04
Col1a1P11087 Rassf5-205ENSMUST00000212202 958 ntTSL 5 BASIC15.28■□□□□ 0.04
Col1a1P11087 Tpd52l1-203ENSMUST00000213639 827 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
Col1a1P11087 AC125206.1-201ENSMUST00000214070 739 ntTSL 5 BASIC15.28■□□□□ 0.04
Col1a1P11087 Gm18730-201ENSMUST00000218038 343 ntBASIC15.28■□□□□ 0.04
Col1a1P11087 Gm9826-201ENSMUST00000029124 1299 ntBASIC15.28■□□□□ 0.04
Col1a1P11087 Krtap19-1-201ENSMUST00000081334 493 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Col1a1P11087 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Col1a1P11087 Spatc1l-201ENSMUST00000009259 1332 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col1a1P11087 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Col1a1P11087 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col1a1P11087 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col1a1P11087 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col1a1P11087 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col1a1P11087 Pim1-201ENSMUST00000024811 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col1a1P11087 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col1a1P11087 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC15.28■□□□□ 0.04
Col1a1P11087 Tjap1-203ENSMUST00000180283 2368 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
Col1a1P11087 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Col1a1P11087 Dpm2-203ENSMUST00000140592 1412 ntTSL 5 BASIC15.28■□□□□ 0.04
Col1a1P11087 Rbpsuh-rs3-201ENSMUST00000182751 1441 ntBASIC15.28■□□□□ 0.04
Col1a1P11087 Gm11696-203ENSMUST00000188296 1793 ntTSL 3 BASIC15.27■□□□□ 0.04
Col1a1P11087 Gm14921-201ENSMUST00000118643 908 ntBASIC15.27■□□□□ 0.04
Col1a1P11087 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC15.27■□□□□ 0.04
Col1a1P11087 Sncb-202ENSMUST00000134110 722 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.04
Col1a1P11087 Gm24845-201ENSMUST00000158034 109 ntBASIC15.27■□□□□ 0.04
Col1a1P11087 Gm27552-201ENSMUST00000183351 62 ntBASIC15.27■□□□□ 0.04
Col1a1P11087 Gm27844-201ENSMUST00000183613 62 ntBASIC15.27■□□□□ 0.04
Col1a1P11087 Gm6652-201ENSMUST00000186414 1070 ntBASIC15.27■□□□□ 0.04
Col1a1P11087 Gm43298-201ENSMUST00000200887 866 ntTSL 3 BASIC15.27■□□□□ 0.04
Col1a1P11087 Cacng1-201ENSMUST00000021065 1249 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col1a1P11087 Fam168a-210ENSMUST00000216021 968 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Col1a1P11087 Gzmn-202ENSMUST00000225535 989 ntBASIC15.27■□□□□ 0.04
Col1a1P11087 C1qb-201ENSMUST00000046384 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col1a1P11087 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col1a1P11087 Lime1-201ENSMUST00000048077 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col1a1P11087 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col1a1P11087 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col1a1P11087 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col1a1P11087 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col1a1P11087 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col1a1P11087 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Col1a1P11087 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Col1a1P11087 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col1a1P11087 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col1a1P11087 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col1a1P11087 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
Col1a1P11087 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col1a1P11087 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col1a1P11087 Mettl1-201ENSMUST00000006915 1791 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col1a1P11087 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col1a1P11087 Myef2-207ENSMUST00000147105 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col1a1P11087 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col1a1P11087 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col1a1P11087 Gm12266-201ENSMUST00000120311 962 ntBASIC15.27■□□□□ 0.03
Col1a1P11087 Gm14832-201ENSMUST00000121289 322 ntBASIC15.27■□□□□ 0.03
Col1a1P11087 U2af1l4-206ENSMUST00000163654 781 ntTSL 2 BASIC15.27■□□□□ 0.03
Col1a1P11087 U2af1l4-221ENSMUST00000167361 860 ntTSL 2 BASIC15.27■□□□□ 0.03
Col1a1P11087 Gm29087-201ENSMUST00000186462 645 ntTSL 5 BASIC15.27■□□□□ 0.03
Col1a1P11087 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col1a1P11087 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Col1a1P11087 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Col1a1P11087 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col1a1P11087 Men1-202ENSMUST00000078137 2738 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col1a1P11087 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC15.26■□□□□ 0.03
Col1a1P11087 Gm36266-201ENSMUST00000196660 1749 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col1a1P11087 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col1a1P11087 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC15.26■□□□□ 0.03
Col1a1P11087 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col1a1P11087 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Col1a1P11087 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col1a1P11087 Mrap2-201ENSMUST00000049457 1931 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
Col1a1P11087 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC15.26■□□□□ 0.03
Col1a1P11087 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC15.26■□□□□ 0.03
Col1a1P11087 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
Col1a1P11087 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col1a1P11087 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col1a1P11087 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col1a1P11087 Cstl1-201ENSMUST00000109952 629 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Col1a1P11087 Hsd17b10-202ENSMUST00000112617 992 ntTSL 5 BASIC15.26■□□□□ 0.03
Col1a1P11087 Pabpc1l2a-ps-201ENSMUST00000128361 513 ntBASIC15.26■□□□□ 0.03
Col1a1P11087 Gm14051-201ENSMUST00000131603 377 ntTSL 3 BASIC15.26■□□□□ 0.03
Col1a1P11087 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 30.3 ms