Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Trim3Q9R1R2 AC154527.2-201ENSMUST00000225256 1466 ntBASIC12.5□□□□□ -0.41
Trim3Q9R1R2 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC12.5□□□□□ -0.41
Trim3Q9R1R2 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Trim3Q9R1R2 Rsbn1-201ENSMUST00000051139 4762 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trim3Q9R1R2 Gm38037-201ENSMUST00000192600 1624 ntBASIC12.5□□□□□ -0.41
Trim3Q9R1R2 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trim3Q9R1R2 Sv2b-202ENSMUST00000165175 5524 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trim3Q9R1R2 Ubqln5-201ENSMUST00000053743 1915 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Trim3Q9R1R2 Fbxw9-201ENSMUST00000095220 1907 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trim3Q9R1R2 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trim3Q9R1R2 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Trim3Q9R1R2 Fcgr1-201ENSMUST00000029748 2589 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trim3Q9R1R2 Asphd2-201ENSMUST00000031291 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trim3Q9R1R2 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Trim3Q9R1R2 Zfp385c-201ENSMUST00000103119 2766 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trim3Q9R1R2 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trim3Q9R1R2 Tigd2-201ENSMUST00000062626 3007 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Trim3Q9R1R2 Itgb4-202ENSMUST00000068981 5584 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Vipr1-201ENSMUST00000035115 4902 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 4930513N10Rik-204ENSMUST00000212647 3957 ntBASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Reln-201ENSMUST00000062372 10885 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Hps3-202ENSMUST00000108321 3385 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Col9a3-201ENSMUST00000103059 2846 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Cacna1c-225ENSMUST00000219223 7483 ntTSL 5 BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 AC168058.1-201ENSMUST00000219521 2282 ntBASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 2900097C17Rik-202ENSMUST00000192863 4915 ntBASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Agpat5-202ENSMUST00000149565 10779 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Rp2-201ENSMUST00000033372 4417 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Grin1-202ENSMUST00000114307 4127 ntTSL 5 BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Hist1h2ae-201ENSMUST00000102969 704 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Gm12341-201ENSMUST00000119724 503 ntBASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Gm12490-201ENSMUST00000120255 560 ntBASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC12.49□□□□□ -0.41
Trim3Q9R1R2 C430049B03Rik-201ENSMUST00000129764 868 ntTSL 3 BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Gm6745-201ENSMUST00000199216 526 ntBASIC12.49□□□□□ -0.41
Trim3Q9R1R2 AC155258.1-201ENSMUST00000219303 253 ntBASIC12.49□□□□□ -0.41
Trim3Q9R1R2 AC131997.1-201ENSMUST00000228611 1229 ntBASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Tmco5b-201ENSMUST00000040856 1237 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Hist1h2ah-201ENSMUST00000091742 405 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Abi1-201ENSMUST00000078977 3027 ntAPPRIS ALT1 TSL 5 BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Tgm1-203ENSMUST00000178034 2730 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Ak4-201ENSMUST00000102780 4186 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Dhx30-201ENSMUST00000062368 3806 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Usp24-204ENSMUST00000165709 10594 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Trim3Q9R1R2 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Trim3Q9R1R2 Gm13288-201ENSMUST00000094977 2850 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
Trim3Q9R1R2 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Trim3Q9R1R2 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trim3Q9R1R2 Dlgap3-203ENSMUST00000106094 4207 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trim3Q9R1R2 Gm10729-202ENSMUST00000193403 1375 ntBASIC12.48□□□□□ -0.41
Trim3Q9R1R2 Gm9115-201ENSMUST00000120192 1348 ntBASIC12.48□□□□□ -0.41
Trim3Q9R1R2 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trim3Q9R1R2 Fcnb-202ENSMUST00000117486 873 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Trim3Q9R1R2 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Trim3Q9R1R2 Gm12091-201ENSMUST00000146791 830 ntBASIC12.48□□□□□ -0.41
Trim3Q9R1R2 Gm5745-201ENSMUST00000183748 313 ntBASIC12.48□□□□□ -0.41
Trim3Q9R1R2 Gm27772-201ENSMUST00000184900 187 ntBASIC12.48□□□□□ -0.41
Trim3Q9R1R2 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trim3Q9R1R2 Gm7558-201ENSMUST00000193221 1165 ntBASIC12.48□□□□□ -0.41
Trim3Q9R1R2 Ighv5-13-201ENSMUST00000193550 290 ntBASIC12.48□□□□□ -0.41
Trim3Q9R1R2 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Trim3Q9R1R2 Gm44719-201ENSMUST00000206404 149 ntBASIC12.48□□□□□ -0.41
Trim3Q9R1R2 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Trim3Q9R1R2 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trim3Q9R1R2 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC12.48□□□□□ -0.41
Trim3Q9R1R2 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Trim3Q9R1R2 Senp5-201ENSMUST00000023457 3498 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trim3Q9R1R2 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trim3Q9R1R2 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Trim3Q9R1R2 Tmem200a-201ENSMUST00000066049 4115 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trim3Q9R1R2 Gm28386-201ENSMUST00000189147 1849 ntBASIC12.48□□□□□ -0.41
Trim3Q9R1R2 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Trim3Q9R1R2 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 62.9 ms