Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 AC122314.1-201ENSMUST00000223056 2239 ntBASIC15.44■□□□□ 0.06
Scn11aQ9R053 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Scn11aQ9R053 Gm23200-201ENSMUST00000104379 132 ntBASIC15.44■□□□□ 0.06
Scn11aQ9R053 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.06
Scn11aQ9R053 Gm9083-201ENSMUST00000120423 819 ntBASIC15.44■□□□□ 0.06
Scn11aQ9R053 Rpsa-ps12-201ENSMUST00000120596 892 ntBASIC15.44■□□□□ 0.06
Scn11aQ9R053 Gm27046-201ENSMUST00000182160 463 ntBASIC15.44■□□□□ 0.06
Scn11aQ9R053 Gm17087-201ENSMUST00000184183 471 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
Scn11aQ9R053 Gm5051-201ENSMUST00000204085 485 ntBASIC15.44■□□□□ 0.06
Scn11aQ9R053 Gm44126-201ENSMUST00000204831 514 ntBASIC15.44■□□□□ 0.06
Scn11aQ9R053 Gm5950-201ENSMUST00000213337 772 ntBASIC15.44■□□□□ 0.06
Scn11aQ9R053 Cryga-201ENSMUST00000061497 625 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Scn11aQ9R053 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Scn11aQ9R053 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Scn11aQ9R053 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Scn11aQ9R053 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Scn11aQ9R053 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Scn11aQ9R053 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Scn11aQ9R053 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Scn11aQ9R053 Ppil2-212ENSMUST00000164458 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Scn11aQ9R053 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Scn11aQ9R053 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Scn11aQ9R053 Cdh7-206ENSMUST00000137092 2681 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Scn11aQ9R053 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Scn11aQ9R053 Noct-201ENSMUST00000023849 3059 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Scn11aQ9R053 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Scn11aQ9R053 Ptges3l-203ENSMUST00000107252 853 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Scn11aQ9R053 Gm4993-201ENSMUST00000118719 1174 ntBASIC15.44■□□□□ 0.06
Scn11aQ9R053 Gm12678-201ENSMUST00000154177 692 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Scn11aQ9R053 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Scn11aQ9R053 Rps13-201ENSMUST00000170953 589 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Scn11aQ9R053 Rhoc-204ENSMUST00000176347 583 ntTSL 5 BASIC15.44■□□□□ 0.06
Scn11aQ9R053 Gm13381-202ENSMUST00000177012 640 ntTSL 5 BASIC15.44■□□□□ 0.06
Scn11aQ9R053 Ighv5-7-201ENSMUST00000192302 244 ntBASIC15.44■□□□□ 0.06
Scn11aQ9R053 Gm45219-201ENSMUST00000205602 465 ntBASIC15.44■□□□□ 0.06
Scn11aQ9R053 D9Wsu149-201ENSMUST00000214169 594 ntBASIC15.44■□□□□ 0.06
Scn11aQ9R053 AC122876.1-201ENSMUST00000217619 825 ntBASIC15.44■□□□□ 0.06
Scn11aQ9R053 AC140293.1-201ENSMUST00000225626 1247 ntBASIC15.44■□□□□ 0.06
Scn11aQ9R053 AC126253.1-202ENSMUST00000226732 835 ntBASIC15.44■□□□□ 0.06
Scn11aQ9R053 Cym-201ENSMUST00000029504 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Scn11aQ9R053 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
Scn11aQ9R053 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Scn11aQ9R053 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
Scn11aQ9R053 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
Scn11aQ9R053 Slc25a25-204ENSMUST00000113308 2643 ntTSL 5 BASIC15.44■□□□□ 0.06
Scn11aQ9R053 Ccdc71-201ENSMUST00000061209 3092 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Scn11aQ9R053 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Scn11aQ9R053 4933421I07Rik-201ENSMUST00000032648 1413 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Scn11aQ9R053 Gm5939-201ENSMUST00000119613 2874 ntBASIC15.43■□□□□ 0.06
Scn11aQ9R053 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Scn11aQ9R053 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
Scn11aQ9R053 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
Scn11aQ9R053 Olfr239-201ENSMUST00000112165 948 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
Scn11aQ9R053 Gm14726-201ENSMUST00000120623 896 ntBASIC15.43■□□□□ 0.06
Scn11aQ9R053 D630024D03Rik-201ENSMUST00000126265 720 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Scn11aQ9R053 Egfl7-209ENSMUST00000150404 892 ntAPPRIS P4 TSL 5 BASIC15.43■□□□□ 0.06
Scn11aQ9R053 Gm3508-201ENSMUST00000186012 792 ntBASIC15.43■□□□□ 0.06
Scn11aQ9R053 Gm31256-201ENSMUST00000194705 506 ntBASIC15.43■□□□□ 0.06
Scn11aQ9R053 Gm38139-201ENSMUST00000195806 704 ntTSL 2 BASIC15.43■□□□□ 0.06
Scn11aQ9R053 Gm18212-201ENSMUST00000211678 889 ntBASIC15.43■□□□□ 0.06
Scn11aQ9R053 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC15.43■□□□□ 0.06
Scn11aQ9R053 Dmrtc1c2-201ENSMUST00000087896 1255 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Scn11aQ9R053 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Scn11aQ9R053 Plekha5-212ENSMUST00000204876 1928 ntTSL 5 BASIC15.43■□□□□ 0.06
Scn11aQ9R053 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Scn11aQ9R053 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Scn11aQ9R053 Gsdma2-201ENSMUST00000017355 1314 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Scn11aQ9R053 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Scn11aQ9R053 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Scn11aQ9R053 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
Scn11aQ9R053 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Scn11aQ9R053 Cdk10-212ENSMUST00000213005 1580 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Scn11aQ9R053 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Scn11aQ9R053 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Scn11aQ9R053 Pga5-201ENSMUST00000025647 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Scn11aQ9R053 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC15.42■□□□□ 0.06
Scn11aQ9R053 Gm11564-201ENSMUST00000105055 691 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
Scn11aQ9R053 Uxt-202ENSMUST00000123836 875 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Scn11aQ9R053 Gm15395-201ENSMUST00000153724 702 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Scn11aQ9R053 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Scn11aQ9R053 Gm16740-201ENSMUST00000181819 956 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Scn11aQ9R053 Gm43701-201ENSMUST00000202047 391 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Scn11aQ9R053 Gm45224-201ENSMUST00000208203 414 ntBASIC15.42■□□□□ 0.06
Scn11aQ9R053 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Scn11aQ9R053 Olfr368-201ENSMUST00000053990 985 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
Scn11aQ9R053 Pard6b-201ENSMUST00000052125 3399 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Scn11aQ9R053 Ankrd42-202ENSMUST00000118157 2782 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Scn11aQ9R053 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Scn11aQ9R053 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Scn11aQ9R053 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC15.42■□□□□ 0.06
Scn11aQ9R053 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Scn11aQ9R053 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Scn11aQ9R053 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Scn11aQ9R053 Gm44401-201ENSMUST00000204462 2375 ntBASIC15.42■□□□□ 0.06
Scn11aQ9R053 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC15.42■□□□□ 0.06
Scn11aQ9R053 Ccdc163-204ENSMUST00000106464 1213 ntAPPRIS P2 TSL 5 BASIC15.41■□□□□ 0.06
Scn11aQ9R053 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC15.41■□□□□ 0.06
Scn11aQ9R053 Lamr1-ps1-201ENSMUST00000119759 874 ntBASIC15.41■□□□□ 0.06
Scn11aQ9R053 Gm13315-201ENSMUST00000120376 991 ntBASIC15.41■□□□□ 0.06
Scn11aQ9R053 Tnnt1-213ENSMUST00000178163 934 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms